Gene CPR_1682 details

Gene Information

• Locus tag: CPR_1682
• Symbol: rimM
• ID: 4204836
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Clostridium perfringens SM101
• Kingdom: Bacteria
• Replicon accession: NC_008262
• Strand: -
• Start bp: 1878039
• End bp: 1878536
• Gene Length: 498 bp
• Protein Length: 165 aa
• Translation table: 11
• GC content: 29%
• IMG OID: 642566232
• Product: 16S rRNA-processing protein RimM
• Protein accession: YP_698997
• Protein GI: 110803164
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0806] RimM protein, required for 16S rRNA processing
• TIGRFAM ID: [TIGR02273] 16S rRNA processing protein RimM

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 0.00118486
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGAAGATT TATTAGTAGT TGGTCAAATA ATAAACACTC ATGGCTTAAG AGGTGAAATG 
AAAGTTATGC CTTTAACTGA AGATATGAGA AGATTTGACT ATTTAGAATA TGTTATCTTA 
AAAGGCCAAA AGATTAAAGT AGAGGGCGTA AAATACTTTA AGGATAAAGT TATACTTAAA 
TTACAAGGAA TAAATTCAAT AGAGGAAGCT GAAAAATTAA AGAGAACTTA TTTAGAAATA 
GAACGTGAAG ATGCTATAGA GCTTGAAGAA GATGAATATT TCATAGTTGA TTTAGTTGGA 
TGCACTGTTG TTGATACAGA AGGATTTGAG TATGGAAAAA TCAAAGATGT AATCCAAACT 
CCAAGTAATG ATGTTTATTG GGTTCAAGGA AAGAAGGAAG TATTAGTTCC AGTATTAAAG 
GATATAGTTT TAGATATTAA TATGGATGAA AAATTAATTA CTATAAGACC TTCTGGAGAG 
TGGCAATATG AAGATTAA 

 

Protein sequence

MEDLLVVGQI INTHGLRGEM KVMPLTEDMR RFDYLEYVIL KGQKIKVEGV KYFKDKVILK 
LQGINSIEEA EKLKRTYLEI EREDAIELEE DEYFIVDLVG CTVVDTEGFE YGKIKDVIQT 
PSNDVYWVQG KKEVLVPVLK DIVLDINMDE KLITIRPSGE WQYED