Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPR_1655 |
Symbol | truB |
ID | 4206067 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium perfringens SM101 |
Kingdom | Bacteria |
Replicon accession | NC_008262 |
Strand | - |
Start bp | 1849067 |
End bp | 1849951 |
Gene Length | 885 bp |
Protein Length | 294 aa |
Translation table | 11 |
GC content | 29% |
IMG OID | 642566205 |
Product | tRNA pseudouridine synthase B |
Protein accession | YP_698970 |
Protein GI | 110803856 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0130] Pseudouridine synthase |
TIGRFAM ID | [TIGR00431] tRNA pseudouridine 55 synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATGGAG TAATTAACAT ATATAAAAAT ACGGGAATGA CTTCATTTGA TGTTGTGGCC ATGGTAAGAA GAGTTGCAAA GATGAAAAAG GTAGGACATA CAGGAACTTT AGATCCAGAG GCTTCTGGAG TTTTACCTGT ATGCCTTGGA AAAGCTACAA AAATTATAGA TTATATAATG GAAAATAAAA AAGTTTATAG AGTGAATTTA AAACTTGGTA TGGTTACTGA CACATATGAT TTAGAAGGAG AAGTTTTAAG AGAAGAGGAT GCATCACATA TAACAAAGGA TGAAATATTA AATTGTATAA ATTCCTTTGT AGGAACAATA GATCAAGTTC CACCAATGTA TTCTGCTTTA AAACAAAATG GAGTAAGATT ATATGAATTA GCACGTCAAG GAATAGAAGT TCACAGAGAA GCTAGAAAAA TTACTATTTA TTCTATTGAA AATATAAAAA TAGAATCAAA TGATAATATA CAAATGGATG TTTGTTGTTC TAAGGGAACA TATATAAGAA GCCTTTGCTA TGATATTGGT GAAAAATTAA ATGTTGGAGC AACAATGACT GCCTTAGAGA GAATACAAAA TGGTCCATTT ATTAAAGAAG AAGCAATAAA TATAGAGGAT TTAACAGAAG AACTTTTAGA AAAACACATT ATTTCCATTG AAAAGGCTTT AGATTCTTTT GAAAAAATCA CAGTAAATGA GAAGTTTGGT AAGCTTTTAA GAAATGGTGT TAAAGTATTT GATAATAGAA TGTATAGTGA AGAAGTTGAA TTTAATAAAC TATATAGAGT ATATGAAGAC AATGGAGTCT TTTTGGGATT AGGAAAAAGG GATGAAAAAG GATTTAAATT GGAGAAATTA CTGATAGAGG AGTAG
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Protein sequence | MNGVINIYKN TGMTSFDVVA MVRRVAKMKK VGHTGTLDPE ASGVLPVCLG KATKIIDYIM ENKKVYRVNL KLGMVTDTYD LEGEVLREED ASHITKDEIL NCINSFVGTI DQVPPMYSAL KQNGVRLYEL ARQGIEVHRE ARKITIYSIE NIKIESNDNI QMDVCCSKGT YIRSLCYDIG EKLNVGATMT ALERIQNGPF IKEEAINIED LTEELLEKHI ISIEKALDSF EKITVNEKFG KLLRNGVKVF DNRMYSEEVE FNKLYRVYED NGVFLGLGKR DEKGFKLEKL LIEE
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