| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPR_1559 |
|---|
| Symbol | glgB |
|---|
| ID | 4206055 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium perfringens SM101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008262 |
|---|
| Strand | - |
|---|
| Start bp | 1750481 |
|---|
| End bp | 1752460 |
|---|
| Gene Length | 1980 bp |
|---|
| Protein Length | 659 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 30% |
|---|
| IMG OID | 642566110 |
|---|
| Product | glycogen branching enzyme |
|---|
| Protein accession | YP_698875 |
|---|
| Protein GI | 110803844 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0296] 1,4-alpha-glucan branching enzyme |
|---|
| TIGRFAM ID | [TIGR01515] alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.018797 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGAAATT ATAAAGAACT TAAGCATGAG AAAAATGGTA ACGTTACCGA AAAAATAGGG
GAAAACAAAG GAAAAAGTAA AAAAATGTCT AAAGATGAAA GTTTATTAAG CTTTGATTTG
TTTTTAGAAG GAAAAGAACA TTCAGCTTAT AAGTTTATGG GAGCTCATTT TATAACTGAA
AATAGAAAGA GGGGTGTAAG ATTTACTACT TGGTCTCCAA GGGCTAGCAA AATATATATT
ATAGGTGATT TTAATAATTG GGAATTAAAA GAAGAATACT CCATGAAAAA AATTAATGAA
AGAGGAATAT GGAGTTTATT TATTCCTAAA TTAGAAGAGG GTATAAAGTA TAAATTTGCA
GTGGAAAATG AATGTGGAAA TAATACAGTA TATAAGTCTG ACCCATATGC ATTTAAATCA
GAATTGAGAC CTAATACAGC CTCTGTACTT ACTAAAATTA AGAGTTTTAG ATGGGGAGAT
AAGAGATGGC TTAATAAAAG AGAAAAAGAA GGTTTAGATA ATAAACCTAT GAATATATAT
GAACTTCATT TAGGTTCTTG GAAAAGAAAA GATGGAGAGT TTATGACCTA TGAAGAAATA
AGCGAAGTAC TAGTAGAATA TATAAAAGAG ATGGGATACA CCCATGTTGA GTTCATGCCT
GTAAATGAAC ATCCCTTAGA TGCTTCTTGG GGATATCAAG GAGTAGGGTA TTACTCAGTT
ACAAGTAGAT ATGGAGATTT AAATGGATTA AAAACTCTTA TAAATAAACT TCATAAAAAT
AATATTGGAG TATTACTAGA TTGGGTACCT AGCCATTTTT GTAAGGATGA GCATGGATTA
TTTATGTTTG ATGGATCACC AACCTATGAA TATGAAGTTT GGTGGAAGGC TAATAATGAA
GGATGGGGAA CATGTAATTT TGATTTAGGA AGACCAGAGG TTAAATCCTT TTTATTTTCT
AATGCTATGT ACTGGATAAA TGAGTTTCAT GTAGATGGAT TAAGAGTAGA TGCGGTTTCT
AATATGCTTT ATTTAGATTA TGGAAGAGAA TATGGAGAAT GGGAACCAAA TATCTATGGA
GAAAATGGAA ACCTTGAAGC TATTGCCTTT TTAAAAGAAC TAAATACAAT TATAAAAAAA
GAAGGAAAAG GGGCAATTAC AGTAGCTGAA GAATCAACTT CATGGGAAGG AATTACTAAG
TCTGTTGAAG AAGGTGGATT AGGATTTGAT TATAAATGGA ACATGGGATG GATGAATGAT
ACTTTAAGTT ATATTGAGTT AGATCCAATA TACAGAAAGT ATCATCATAA TAAAATGAAC
TTTTCAATGA TGTACAATTA TTCAGAAAAG TTTATTCTAC CAATTTCACA TGATGAGGTT
GTTCATGGAA AGAAATCTCT TATAAATAAA ATGTGGGGAG ATGATTGGAA GAAGTATGCA
GGACTAAGAC TTTATGCTTC TTTTATGATG GGACACCCAG GGAAAAAATT AATGTTTATG
GGCTGTGAAT TTGGTCAGTT CGTTGAATGG AGAGAATGGG AAGAACTTCA ATGGAGTGTT
ATTGAAGAAT TTGATATACA CAGAAAAACC AAGGAGTATT TTAAAGCATT AAATAAATTT
TATTTAGAAA ATAGTTCTTT ATGGTCACTT GATTATGAAG AAGAAGGCTT TAAATGGATG
GATGCTGATA ATTCAGAAGA AAGTGTACTT TCATTTATAA GAATTGGAAA GAATAAAAAG
GAAAAATTAA TATTTATATG TAATTTTACT CCAGAGGTTT ATTATGATTT TAAAGTAGGT
GTTCCAGAGC TTGGAGAATA TGTTGAGGTC TTTAACTCAG ATTCCTTAGA ATTTGGAGGA
GTAGGAAATA TTATGGGAGA TAGTATTTTA AAAGCCACAG AGGAAAGTTT TAAAGATTTT
GATTATTCAA TAAGTGTTAA GGTACCTCCA TTAGGAACTT TAGTTTTAAA AGTAAAATAA
|
|---|
| Protein sequence | MRNYKELKHE KNGNVTEKIG ENKGKSKKMS KDESLLSFDL FLEGKEHSAY KFMGAHFITE
NRKRGVRFTT WSPRASKIYI IGDFNNWELK EEYSMKKINE RGIWSLFIPK LEEGIKYKFA
VENECGNNTV YKSDPYAFKS ELRPNTASVL TKIKSFRWGD KRWLNKREKE GLDNKPMNIY
ELHLGSWKRK DGEFMTYEEI SEVLVEYIKE MGYTHVEFMP VNEHPLDASW GYQGVGYYSV
TSRYGDLNGL KTLINKLHKN NIGVLLDWVP SHFCKDEHGL FMFDGSPTYE YEVWWKANNE
GWGTCNFDLG RPEVKSFLFS NAMYWINEFH VDGLRVDAVS NMLYLDYGRE YGEWEPNIYG
ENGNLEAIAF LKELNTIIKK EGKGAITVAE ESTSWEGITK SVEEGGLGFD YKWNMGWMND
TLSYIELDPI YRKYHHNKMN FSMMYNYSEK FILPISHDEV VHGKKSLINK MWGDDWKKYA
GLRLYASFMM GHPGKKLMFM GCEFGQFVEW REWEELQWSV IEEFDIHRKT KEYFKALNKF
YLENSSLWSL DYEEEGFKWM DADNSEESVL SFIRIGKNKK EKLIFICNFT PEVYYDFKVG
VPELGEYVEV FNSDSLEFGG VGNIMGDSIL KATEESFKDF DYSISVKVPP LGTLVLKVK
|
|---|
| |