| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPR_1542 |
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| Symbol | |
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| ID | 4206099 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium perfringens SM101 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008262 |
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| Strand | - |
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| Start bp | 1728279 |
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| End bp | 1728992 |
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| Gene Length | 714 bp |
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| Protein Length | 237 aa |
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| Translation table | 11 |
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| GC content | 27% |
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| IMG OID | 642566094 |
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| Product | phage shock protein A |
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| Protein accession | YP_698859 |
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| Protein GI | 110803810 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG1842] Phage shock protein A (IM30), suppresses sigma54-dependent transcription |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.123481 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGGAATAT TTAATAGAAT ATCAAATATG ATTAAGGCTA AGACTAACTC AGCTTTAGAT
GAAATGGAGA ATCCAGTAGA ATTATTAGAT CAAAAAATAA GAGATATGGA GAAATCTTTT
AATGAAGCTA AAAGATCATC AGCTCAAATT TTTGGTAACT TAAAAGATAC TGAAAAGAAA
ATGAATGAAG CTAAGGAAGA GTCAGCTCAG TATGATGAAA AAGTAAGATT AGCAATGAGC
AAAGGAAATG AAGAGTTAGC TAAGAAAGCT TTAAAACTTA AATTAGATAG TGATAAGAAA
TTTGAGTCTT TAAAGTCAAG CTATGAAGGA CAAAGAGCTA AAGCTGATGT TTTAAAAGGA
AAATTAGTGG AATTAGAAAA AGAATTAGAT AAAACAAGAA GTTATAGAGA TGAAGCAGTA
GCTAGACTTA ATAATGCTGA AGCTTCAAAA CAAATAAATG AAGTTATTGC AAATGTTCAA
AGTAAGAGTA ATTCAATTAA TATTGATGAT ATAGAAAGAA GTATTTCAAG AAAAGAGAGT
TATGCTGCTG GATTAGAAGA ATTAAAAGGT GAAAGTTTAG ATGATGAATT TGCTAAATTA
GAAGAATTAA GTTTAGATGA TGAATTAAAT AAATATAGAA CTCAAAATAC ACAAGAAACT
AAAACTTCAG ATTCAGAGGT AGATTTAGAA TTAGAGAAAT ATAAAAATAA ATAA
|
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| Protein sequence | MGIFNRISNM IKAKTNSALD EMENPVELLD QKIRDMEKSF NEAKRSSAQI FGNLKDTEKK
MNEAKEESAQ YDEKVRLAMS KGNEELAKKA LKLKLDSDKK FESLKSSYEG QRAKADVLKG
KLVELEKELD KTRSYRDEAV ARLNNAEASK QINEVIANVQ SKSNSINIDD IERSISRKES
YAAGLEELKG ESLDDEFAKL EELSLDDELN KYRTQNTQET KTSDSEVDLE LEKYKNK
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