Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPR_1541 |
Symbol | |
ID | 4205112 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium perfringens SM101 |
Kingdom | Bacteria |
Replicon accession | NC_008262 |
Strand | - |
Start bp | 1727153 |
End bp | 1727983 |
Gene Length | 831 bp |
Protein Length | 276 aa |
Translation table | 11 |
GC content | 32% |
IMG OID | 642566093 |
Product | HAD family hydrolase |
Protein accession | YP_698858 |
Protein GI | 110803089 |
COG category | [R] General function prediction only |
COG ID | [COG0561] Predicted hydrolases of the HAD superfamily |
TIGRFAM ID | [TIGR00099] Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily [TIGR01484] HAD-superfamily hydrolase, subfamily IIB |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.145336 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAATTATA AATTAGTTTG TATAGATATG GATGGTACGC TTTTAGATTC TCATCACAGA GTTAGTGAAA GAAATAAAGA GGCTTTAAAG AAAGCCATTG AAAAAGGAGT ACATATTGCC ATATCAACAG GAAGGGTTTT TCCGTCAGCT AGAATATATG GGAATATAAT AGGAGTAAAT GCACCATTAA TTTGTTCAAA TGGTTCATAT ATAAAGGATA AAAATACTGG TGAGTTAATA TTTAAATCTA CACTAGACAG GGAAACTTAC TTTAAAATAT GTGATATTAT AAACAAATAT AAGTTTTTAG CTTATGTAGA CTCTACAGAT GGACTAATAG CAGATACAGA TATTCCAGAG GATGATAGTC ATAGACTTAT GAATAGCTGG GTAGATGAGG AAGAAAAAAT AAAATTCTAC AAATATGATG ACTTAAGAGA TGCTTATGAT GAACATGGAG AAGATATATT AAAGTTCATA ATAATAAAAA AAGAAGGTGG ACCTAATATA GAAGAAGCTA AGGAGGAATT TGAAGCCTTA GAAGGAGTAG ATTTAGTTTA TGCTTCTTGG GGTGGATGTA TAGAGATCAT GAAAAAAGGA ACTTCAAAGG GAAGTGCAGT TAAAGCCCTT GCAGATAAAT TAGGAATAAG CTTAGAAGAA GTGATATGCA TTGGTGATAG TGGAAATGAT ATATCTATGC TAGAAGAGGC AGGATTATCT GTAGTAATGG GAAATGCACC AGACTTTATT AAGGAATATG GAGATTATAT AACAGATACA AATGAAAATG ATGGCGTTGC TAAGGCTATA GAGAAGTTTA TATTAGAGTA A
|
Protein sequence | MNYKLVCIDM DGTLLDSHHR VSERNKEALK KAIEKGVHIA ISTGRVFPSA RIYGNIIGVN APLICSNGSY IKDKNTGELI FKSTLDRETY FKICDIINKY KFLAYVDSTD GLIADTDIPE DDSHRLMNSW VDEEEKIKFY KYDDLRDAYD EHGEDILKFI IIKKEGGPNI EEAKEEFEAL EGVDLVYASW GGCIEIMKKG TSKGSAVKAL ADKLGISLEE VICIGDSGND ISMLEEAGLS VVMGNAPDFI KEYGDYITDT NENDGVAKAI EKFILE
|
| |