| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPR_1530 |
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| Symbol | |
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| ID | 4206515 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium perfringens SM101 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008262 |
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| Strand | - |
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| Start bp | 1717743 |
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| End bp | 1719437 |
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| Gene Length | 1695 bp |
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| Protein Length | 564 aa |
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| Translation table | 11 |
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| GC content | 26% |
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| IMG OID | 642566082 |
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| Product | GGDEF/HD domain-containing protein |
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| Protein accession | YP_698847 |
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| Protein GI | 110803451 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3437] Response regulator containing a CheY-like receiver domain and an HD-GYP domain
[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain
[TIGR00277] uncharacterized domain HDIG |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.890216 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATTAGAG ATGCAGGTAA CAATAAAAAG AAAAAAGTTG ATGAAATATT ATCAATAGTA
AAAGTATCAT CATTATTATT TTCAGCTATA GCTTTTTTAC AGTATATTTT TAATATTATG
AGTTTACATG GTGAAATACC AGTATATTAT GGTATAGTAC CAGCGGCTCT GGTTTCTATT
TTTTTATTAT CCATAATATA TATATTATGG AGTTTAGCTA GTTTAAACAA ATATAAAGGT
CATATAAATA AGATACAATT AATAGAAACA ATTTTATTTA TGATTATATT TATAATGGCT
ATATTAGTTT CAGGAGGGAA TTCTAGTAAT AATAAATTTT TATTTTTATT TATTATAATA
ACTTCTACAA TACAGGGAGG CATGCATAAA GGAGTTTTGA TATCAGTAGT GTCATCAGCT
ATTATTTTAG CTATAGATTT GATTTTTTCA GTGAATGCTG ATGTAAATAT TTATTTTCAA
AATGATTTAA TATTAGCAGG AGTATTTGTT TTAACAGCTT GGACATTAGG TTTTTATGTA
AAAACTGAAA ATGATCACAT AAAGGAATTA CAAACCTTGC TTAATGAAGA TGGATTAACA
GGGGTTTATA ATCATAGATA TTTTTATGAT AAATTAAGAG AGAAAATGCA TATTAGTGAG
GTTGAAAATG AGAAACTGTC ATTAATATTT ATGGATATAG ATTATTTTAA GCATTATAAC
GATTTGTATG GACATCAAAA AGGTGATGAA GCATTAAAGA AAATAGGAAA ACTTCTAAAA
AATATAGCTA GAGAAAATGA TTTAGTAGCT AGATATGGAG GAGAAGAGTT TGCAATAATT
TTACCTAATA CTTCAGAAGA GGAAGCTACT AAAATTGCAG AAAGAATTAG AAATAAAGTA
GAAAAAACAT ATTTTGAAGG ACAAGAAAAT CAACCTAATG CTAATTTTAC AGTATCTGTT
GGTATAGCTG CATTTCCGGA TAAAGCTAAA AGTGAGCTAG AATTAGTTAA ATGTGCTGAT
GATGCATTAT ATAGAGCTAA ATTTTTCCAT AAAAATAGAG TTGAAACTTA TGTATCTGTT
TTAGATGAAT TAAAACGAGA TTTAAATGAA GAAGAAAATA CTCTTGTCAC ATCCATAAAA
ACTTTAATAA GTATTATAAA TGCAAAAGAT AAATATACGT ATAGCCATGT AGAAAGAGTA
GTTATTTATA GTAGACTTAT GGCTAAAAAA TTGGAACTTT CCGAAGATGA GAAAAAGCAG
TTAATATATG GAGCTTATAT GCATGATATA GGTAAAATAA ATATACCAAA TGAAATATTA
ACTAAAAAGA TGAGACTTAC TAAAGAGGAA TGGGAGATTT TAAAGCAACA TCCTAAAGAT
GGAGTAGAAA TAATAAAATC AGTAAATTCC TTAAAGAATG TAGTGCCTCT TATTTTATAT
CATCATGAGA GATATGATGG CTTTGGATAT CCAGTAGGAT TAAAGGAGAA AGAAATACCA
TACTTAGCAA GGGTATTAAC TGTAATAGAT AGTTTTGATG CTATGACTTC AAGTAGACCT
TATAATAAAA GAAAAACTTA TGATGAAGGA TTAATAGAAC TAGAAAGATG CAGTGGAACT
CAATTTGATC CAGAAATAGT TTGTATTTTT AGTGAAGTGG TTAAGGAAAA TATAAATGAA
ATACAAGATT TTTAA
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| Protein sequence | MIRDAGNNKK KKVDEILSIV KVSSLLFSAI AFLQYIFNIM SLHGEIPVYY GIVPAALVSI
FLLSIIYILW SLASLNKYKG HINKIQLIET ILFMIIFIMA ILVSGGNSSN NKFLFLFIII
TSTIQGGMHK GVLISVVSSA IILAIDLIFS VNADVNIYFQ NDLILAGVFV LTAWTLGFYV
KTENDHIKEL QTLLNEDGLT GVYNHRYFYD KLREKMHISE VENEKLSLIF MDIDYFKHYN
DLYGHQKGDE ALKKIGKLLK NIARENDLVA RYGGEEFAII LPNTSEEEAT KIAERIRNKV
EKTYFEGQEN QPNANFTVSV GIAAFPDKAK SELELVKCAD DALYRAKFFH KNRVETYVSV
LDELKRDLNE EENTLVTSIK TLISIINAKD KYTYSHVERV VIYSRLMAKK LELSEDEKKQ
LIYGAYMHDI GKINIPNEIL TKKMRLTKEE WEILKQHPKD GVEIIKSVNS LKNVVPLILY
HHERYDGFGY PVGLKEKEIP YLARVLTVID SFDAMTSSRP YNKRKTYDEG LIELERCSGT
QFDPEIVCIF SEVVKENINE IQDF
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