| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPR_1513 |
|---|
| Symbol | |
|---|
| ID | 4204128 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium perfringens SM101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008262 |
|---|
| Strand | - |
|---|
| Start bp | 1693112 |
|---|
| End bp | 1694464 |
|---|
| Gene Length | 1353 bp |
|---|
| Protein Length | 450 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 31% |
|---|
| IMG OID | 642566066 |
|---|
| Product | PTS system, sucrose-specific IIBC component |
|---|
| Protein accession | YP_698831 |
|---|
| Protein GI | 110801553 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1263] Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific |
|---|
| TIGRFAM ID | [TIGR00826] PTS system, glucose-like IIB component
[TIGR01996] PTS system, sucrose-specific IIBC component |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.00000189676 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTAAAG AACAAATAGT TGCTCAAGAA ATATTAAAAA ATATTGGTGG AAAAGAAAAT
ATAAAATCAA TGGAACACTG TGCAACTAGG TTAAGACTTA TAGTTAAAGA TAAAAATCTA
ATAAATGAAA AGGCAATTGA GAATATTGAT GGAGTAAGAG GACAATTTTT TGCTGCTGCT
CAATATCAAA TAATTTTAGG AACTGGGTTT GTAAATAAAG TCTTTGCAGC TATGAATGGT
GAAGGAGTAG AAACTGGGAA TGTAAAAGAA GATGCATATA GTGATATGAC TTTACCACAA
AAAATATCTC GTACTTTAGG AGATATTTTT GTTCCTATAA TTCCAGTATT AGTTGCAACA
GGTTTATTTA TGGGATTAAG AGGACTTTTA ACTAATTTAG GAGTTGAATT TAGTCCAACT
TTTAATACTT TATCAGAGGT TTTAACAGAT ACAGCATTTA TATTCTTACC AGCCTTAGTA
GCTTGGTCAA CAATGAAAAA ATTTGGTGGA ACACCTGTGG TTGGTATAGT ATTAGGGCTT
ATGCTTGTAG CCCCTCAGCT TCCAAATGCT TGGCAGGTAG CAGGAGGAGC AAACCCAATA
TATATTTCTT TATTAGGAAT AAGTATCCCT ATAGTAGGTT ACCAAGGATC AGTACTTCCA
GCTTTAGTAT TAGGTATTAT AGCAGCTAAA TTAGAAAAAT TTATTAGAAA ATTTATGCCA
GATGTACTAG ATTTAATATT TACTCCATTT TTAACTTTAT TAGTATCAAT GATTCTTGGA
CTTTTAGTAG TAGGTCCTAT AATGCATACA AGTGAAGTAT ATATATTAGA TTTATTTAAA
ATGTTTTTAA ACTTACCATT TGGAATAGGT GGAGCAATAA TTGGAGGAGT TCATCAAGTT
ATAGTTGTAA CTGGAGTTCA TCATATATTT AATGCTTTAG AAGTTGAATT AATTTCAAGT
ACAGGATTAA ATCCATTTAA TGCAGTAATA ACTGGGGCTA TAGTAGCTCA AGGAGCAGCA
GCTCTTGCAG TTGGATTTAA GACAAAAGAT AAGAAAAAAC GTTCACTATA TATTTCTTCA
GCAATACCAG CCTTTTTAGG AATTACAGAA GCAGCTATAT TTGGAGTAAA CTTAAGATTT
ATTAAACCAT TTATATTTGC ATGTATAGGA GGAGCTGCAT CAGGAATGTT TGCATCAATA
ATGAAATTAG CTGGAACTGG TATGGGAATA ACAGCTATAC CGGGAACACT TCTTTATATT
AATACAGGAT TAATTCAGTA CTTCATAACA GTTGCTATTG GATTTGCTAT TTCATTTGTA
TTAACATATA TATTCTTTAA ACCACAAGAA TAA
|
|---|
| Protein sequence | MSKEQIVAQE ILKNIGGKEN IKSMEHCATR LRLIVKDKNL INEKAIENID GVRGQFFAAA
QYQIILGTGF VNKVFAAMNG EGVETGNVKE DAYSDMTLPQ KISRTLGDIF VPIIPVLVAT
GLFMGLRGLL TNLGVEFSPT FNTLSEVLTD TAFIFLPALV AWSTMKKFGG TPVVGIVLGL
MLVAPQLPNA WQVAGGANPI YISLLGISIP IVGYQGSVLP ALVLGIIAAK LEKFIRKFMP
DVLDLIFTPF LTLLVSMILG LLVVGPIMHT SEVYILDLFK MFLNLPFGIG GAIIGGVHQV
IVVTGVHHIF NALEVELISS TGLNPFNAVI TGAIVAQGAA ALAVGFKTKD KKKRSLYISS
AIPAFLGITE AAIFGVNLRF IKPFIFACIG GAASGMFASI MKLAGTGMGI TAIPGTLLYI
NTGLIQYFIT VAIGFAISFV LTYIFFKPQE
|
|---|
| |