| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPR_1482 |
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| Symbol | |
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| ID | 4205515 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium perfringens SM101 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008262 |
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| Strand | - |
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| Start bp | 1657433 |
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| End bp | 1658143 |
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| Gene Length | 711 bp |
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| Protein Length | 236 aa |
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| Translation table | 11 |
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| GC content | 25% |
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| IMG OID | 642566036 |
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| Product | LytTr family DNA-binding response regulator |
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| Protein accession | YP_698801 |
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| Protein GI | 110802638 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3279] Response regulator of the LytR/AlgR family |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00010327 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGCTTAGTA TTGCTTTATG TGAAGATAAT TCCTTTCAAA GAGAAGAATT GAAAAATAAT
TTAAGTAAAG TTTTAGATGA AATAGGAGTA GAGTATAAAC TTTTAACCTT TGAGACAGGA
GAGGATCTAT TAAGAGAATA TCCAGAAAAA TTAGACATGC TTTTTTTAGA TATTCAAATG
GGTGAATTAA CAGGTATGGA TACTGCTAGA AAGGTTAGAG AGTATGATGA TAAAGTAGAG
ATTATATTTA TAACTGCTCT ATGGGATTAT ATTCAAAAAG GTTATGAAGT TCGTGCTTTT
AGATATTTAA TAAAGCCAGT TAAATTTAAG GAACTACAAG AGCAAGTTAC AGCTTGTATA
GAAAATATTT TACATAAAAG ATATACATAC ATAACAATAA AAGATAAAAA TAATGTTTTA
AAGATTAGAA CAGAAGATAT ACTTTTTCTT GAGACTTTTG AGAGAAAGGT AATAATACAT
ACTAATTCTC AAGATTATAT AGTAAAGATG AGTATGAATA AACTAGAAAA GGAACTTACT
AATAAAGGTT TTTTTAGATG TCATACTAGT TATATTGTAA ATTTAATAAA GATAGAAGAG
ATTAAAAAGG ATTATCTTTT AATAAATAAA TTTACTTTGC CTGTAAGTAA GCATAGAATG
AAAAATTTAA AATTAAGGTT AACTAGCCTT TTAGGGGATT TAATATGTTA A
|
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| Protein sequence | MLSIALCEDN SFQREELKNN LSKVLDEIGV EYKLLTFETG EDLLREYPEK LDMLFLDIQM
GELTGMDTAR KVREYDDKVE IIFITALWDY IQKGYEVRAF RYLIKPVKFK ELQEQVTACI
ENILHKRYTY ITIKDKNNVL KIRTEDILFL ETFERKVIIH TNSQDYIVKM SMNKLEKELT
NKGFFRCHTS YIVNLIKIEE IKKDYLLINK FTLPVSKHRM KNLKLRLTSL LGDLIC
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