| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPR_1409 |
|---|
| Symbol | |
|---|
| ID | 4204704 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium perfringens SM101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008262 |
|---|
| Strand | + |
|---|
| Start bp | 1585987 |
|---|
| End bp | 1586739 |
|---|
| Gene Length | 753 bp |
|---|
| Protein Length | 250 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 30% |
|---|
| IMG OID | 642565963 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_698728 |
|---|
| Protein GI | 110802918 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG4684] Predicted membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.81647 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATGCAG TCTATCAAAC TAGACAAAAA ACAAAAAAAC TAGTAGTTAT TGGTATGCTA
TCTGGTATAT CAATATTTCT AGGGTTGACA GGATTAGGAT TTATAAATAT TCCACCTGTT
AAAGCTACTA TTATGCATAT TCCTGTTATA ATAGGAGCTA TTATTGAGGG TCCTATTGTA
GGAGGATTAA TAGGATTAGT TTTTGGATTA TTTTCTATGT ATCAAGCTTT TACGGCATCA
ACGCCAACTA GTTTTATGTT CTGGAATCCT ATTATAGCTT TAGTCCCTAG AATTCTTATA
GGTGTTATAA GCTACTACGT GTATGTATCT ATGATTAAAG GATCTAAAAA GAATTTAAAA
GCTACATCAA TTATAAGTTC TCTTATTCTT GGAGTTCTTC TATTTGTAAG TTCTGAAGCT
TTAACAGATT CTTTAACTAT ATCAGCTGTA ATCGGTGTTT TATTCTTTTT AGCAAGTATG
ATTTTTATGT TTAAATTTAA GCATAAAAAT AAAGAAGAAG CCTTGTCTAT AGGTACAGCT
TCCGTAATTG GAACCTTAAC AAATACCATA GGTGTACTTG GCTTAACATA TGTTTTTTAT
TTAGAGAGAT ATGCTTCTGC TCTAGGAATA TCTGAACATG CTGCAAAATT AACTTTAGCA
GGAATAGGAG TTACAAATGG AATTCCTGAG GCATTTATAT CAGCCTTAAT ATCAATTCCT
GTTATATTAG GAGTTAGAAA AATTTTAAGA TAA
|
|---|
| Protein sequence | MNAVYQTRQK TKKLVVIGML SGISIFLGLT GLGFINIPPV KATIMHIPVI IGAIIEGPIV
GGLIGLVFGL FSMYQAFTAS TPTSFMFWNP IIALVPRILI GVISYYVYVS MIKGSKKNLK
ATSIISSLIL GVLLFVSSEA LTDSLTISAV IGVLFFLASM IFMFKFKHKN KEEALSIGTA
SVIGTLTNTI GVLGLTYVFY LERYASALGI SEHAAKLTLA GIGVTNGIPE AFISALISIP
VILGVRKILR
|
|---|
| |