| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPR_1338 |
|---|
| Symbol | thiD |
|---|
| ID | 4205809 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium perfringens SM101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008262 |
|---|
| Strand | - |
|---|
| Start bp | 1509157 |
|---|
| End bp | 1509951 |
|---|
| Gene Length | 795 bp |
|---|
| Protein Length | 264 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 31% |
|---|
| IMG OID | 642565892 |
|---|
| Product | phosphomethylpyrimidine kinase |
|---|
| Protein accession | YP_698658 |
|---|
| Protein GI | 110802744 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0351] Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase |
|---|
| TIGRFAM ID | [TIGR00097] phosphomethylpyrimidine kinase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.00019728 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTAAAT TATTTAATGC ATTAACAATT GCAGGGTCAG ATAGTTCAGG GGGAGCAGGA
ATACAGGCTG ATATAAAAGC TTTTTCAGCT AATGGAGTTT ACGGAATGAG TATAATAACT
GCCATAACAG CTCAGAATAC TCAAGGAGTT TTTGAAATAA TGGATGTTAC TCCTGAAATC
ATAGAAAAAC AGATAGAGGT TATTTTTAAT GATATAGAAG TAGGTGCCAT AAAAATAGGT
ATGGTATCTA AAATTGAATC AATAGAAGCC ATAAGTAATG CTTTAGGAAG AGTAGAAAAA
TTACCTCAAA TAGTATTAGA TCCTGTTATG ATTTCAAAAA GTGGATTTAA GCTTTTATCA
GACGATGCAA AAAATACTTT GATAGAGAAA TTAATACCAA TAGCTACTTT AATAACTCCA
AATTTACCAG AGGCAGAAGA ATTATTAGGT AGAGAAATAC TTACAATAGA AGATATGAAA
AAGGCAGCCT GTGATCTTAA AAAATTAGGA GCAAAAAATG TTTTAATTAA GGGTGGACAT
TTAGAAGGAG AGGCTACAGA TATTTTATAT GATGGTGAAA ACTTTACTCT TTTTGATGAA
GAGAGAATAG ATACAAAGCA TACCCATGGA ACAGGATGTA CCTTATCATC AGCTATTACA
GCTAATTTAT CAAAGGGAAT GAATATAGTT GATTCTGTGA GATTTGGAAA AGAATATATT
ACAGGTGCTA TAAAAAATGG CTTTGAACTT GGAAAAGGTG TTGGACCAAC ACATCATTTC
TATAAATTTT ACTAG
|
|---|
| Protein sequence | MSKLFNALTI AGSDSSGGAG IQADIKAFSA NGVYGMSIIT AITAQNTQGV FEIMDVTPEI
IEKQIEVIFN DIEVGAIKIG MVSKIESIEA ISNALGRVEK LPQIVLDPVM ISKSGFKLLS
DDAKNTLIEK LIPIATLITP NLPEAEELLG REILTIEDMK KAACDLKKLG AKNVLIKGGH
LEGEATDILY DGENFTLFDE ERIDTKHTHG TGCTLSSAIT ANLSKGMNIV DSVRFGKEYI
TGAIKNGFEL GKGVGPTHHF YKFY
|
|---|
| |