| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPR_1335 |
|---|
| Symbol | recQ |
|---|
| ID | 4206413 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium perfringens SM101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008262 |
|---|
| Strand | - |
|---|
| Start bp | 1505727 |
|---|
| End bp | 1507505 |
|---|
| Gene Length | 1779 bp |
|---|
| Protein Length | 592 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 28% |
|---|
| IMG OID | 642565889 |
|---|
| Product | ATP-dependent DNA helicase RecQ |
|---|
| Protein accession | YP_698655 |
|---|
| Protein GI | 110803539 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0514] Superfamily II DNA helicase |
|---|
| TIGRFAM ID | [TIGR00614] ATP-dependent DNA helicase, RecQ family
[TIGR01389] ATP-dependent DNA helicase RecQ |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.764051 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGAAGAG AGTTTGAGGT ATTAAATAAT ATTTTTGGAT ATAGGGAATT TAGAAAAGGG
CAACAGGAGG TAATAGATAA GATCTTAAGT GGAAAGGATG TATTTTGTAT ATTACCTACT
GGAGGAGGAA AATCCTTATG TTATGAAATA CCTGCTTATA TTTTTAAAGG AACAACACTT
GTTATTTCTC CCTTAATATC TCTTATGAAG GATCAAGTTG ATAACTTAAA TTCCTTAGGA
ATTAATGCGG CTTATATAAG TGGAGGAAAT GACTTTGAAG AGGTTAAAAA TATAATTAGG
AAATTCATAA AAGGAGAGTT TAGGCTTCTT TATGTATCAC CTGAGAGATT AGAAAATAGA
TATTTTTTAG ATAATATAGA AGAAGCTAAT ATTGCACAAA TTGTAGTTGA TGAAGCTCAC
TGCGTATCAA TGTGGGGACA TGACTTTAGA AAAAGTTATA GCAAGATAAA ACCATTTATT
TGTAATCTAA AAAAAAGACC AATTATTACA GCCTTTACAG CTACGGCTAC AGAGACAGTT
ATGAAGGATT CCATTGAACT TTTAGGTCTT CATAATCCCT TTATTTATAA GGGGAGCTTT
AGTAGAGATA ATTTGGAGAT AAATGTATTA AAAGAAGTTG ATAAATTAGA AATTATAAGT
GAAATTATAA GTGAACATGA GGAAGAGTCA GGAATAATTT ATTGCTCAAC TAAAAATGAA
GTTGAGGAAC TTTATAAACA TATGCTTTAT AGAGGGAAAA GTGTTGGGAA ATATCATGGA
TCATTAAAAG ATAAAGAAAA AAATTATTAC CAAGAAGAAT TTTTAAATGA CAATTTTAAG
GTTATGATTG CTACAAATGC TTTTGGTATG GGAATTGATA AGCCTGATGT TAAGTTTATA
ATACATTCAA CATTTCCAAA AAGTATAGAA AATTATTATC AAGAAATAGG CCGTGGAGGA
AGAGATGGAA GCTTAGCTAA GTGTTATCTT CTTTATTCAG AGCAAGATAT AAGAGTCATG
GATTATTTAA TAAGTTCAAC TACAGAAATA TCTAGAAGAA CTATAGAGCT TAAAAAATTA
GAAAAAATAA TAGAGTTTTG TAATTATGAT AAGTGTCTTA GAAAATATAT TTTAGATTAT
TTTGGAGAGG AAAATTCCAT AAAGTATTGC AACAATTGTA CTAACTGCTT AAAAAATAGT
GATTTAATAG ATATGACATT AGAGGCACAA AAAATATTAT CATGTATATA TAGAACAAAG
GAAGCCTTTG GAGAAAGTGT TTTAATAGAT ATTTTAAGGG GAATTCATGG GCCAAAGGTT
GAAAAGTATA AGCTATATGA GCTTTCAACC TTTGGAATAA TGAAAGAATA TACAAGTAAG
TATATAAAGG ACATAATAAA GGAGCTTTTA TCTATTAAGG CTTTAGAGAG AAAAGAAGGA
ACATATTCTA TGGTAAAATT AAATAGAAAA TCTATAGGAA TATTAAAGGG AAAAGAAAAG
GTATTTTTAG ATGTTAATAA TAATGAAGAA AGCATGTGCA TGGATTTAGA ACTTTTCAAG
AAACTTCGCA TTTTAAGAAA AGATATATCA AGAAGAGAAG GAGTAAAACC ATACATAGTT
TTTACAGATT CAATGATTAT GGAGATAATA AATAAAAATC CTAAAAGTAA AGAGGATTTA
AAAAATATTA GGGGATTTGG AGAGCAGAAA ATAACAAAGT ATGGCCCTTT TATTCTTACA
ACCTTAAGGG ACTATGAAAA GTATGGAAAA AGAAATTAG
|
|---|
| Protein sequence | MRREFEVLNN IFGYREFRKG QQEVIDKILS GKDVFCILPT GGGKSLCYEI PAYIFKGTTL
VISPLISLMK DQVDNLNSLG INAAYISGGN DFEEVKNIIR KFIKGEFRLL YVSPERLENR
YFLDNIEEAN IAQIVVDEAH CVSMWGHDFR KSYSKIKPFI CNLKKRPIIT AFTATATETV
MKDSIELLGL HNPFIYKGSF SRDNLEINVL KEVDKLEIIS EIISEHEEES GIIYCSTKNE
VEELYKHMLY RGKSVGKYHG SLKDKEKNYY QEEFLNDNFK VMIATNAFGM GIDKPDVKFI
IHSTFPKSIE NYYQEIGRGG RDGSLAKCYL LYSEQDIRVM DYLISSTTEI SRRTIELKKL
EKIIEFCNYD KCLRKYILDY FGEENSIKYC NNCTNCLKNS DLIDMTLEAQ KILSCIYRTK
EAFGESVLID ILRGIHGPKV EKYKLYELST FGIMKEYTSK YIKDIIKELL SIKALERKEG
TYSMVKLNRK SIGILKGKEK VFLDVNNNEE SMCMDLELFK KLRILRKDIS RREGVKPYIV
FTDSMIMEII NKNPKSKEDL KNIRGFGEQK ITKYGPFILT TLRDYEKYGK RN
|
|---|
| |