| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPR_1306 |
|---|
| Symbol | |
|---|
| ID | 4204197 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium perfringens SM101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008262 |
|---|
| Strand | - |
|---|
| Start bp | 1477477 |
|---|
| End bp | 1478547 |
|---|
| Gene Length | 1071 bp |
|---|
| Protein Length | 356 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 30% |
|---|
| IMG OID | 642565862 |
|---|
| Product | membrane lipoprotein tmpC precursor |
|---|
| Protein accession | YP_698628 |
|---|
| Protein GI | 110801562 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1744] Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.116551 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAATTAA AAAAAACGTT TAAAGTTTTA GCTTTGCTTT TAGGAGTAAC TTCAATAATT
GTTGGATGTG GTGCAAATAA TTCCTCGGCT TTAAAAAAAG CAGATATTAT AGAAAAACAA
GTTTATAATT TTGCCTTAGT AAAAGATGAC TTTTCTAATG AGGAAAATTA TTTTGCTGAT
TCAGCTGTAG AAGGATTAGA GAGAATAAAA AAAGAATATA GTGCTGAAAT AGAAGTTTTT
GATACTAATT CATCAGAGGA TTATGAGAAG AGACTTAGAG AAGCAGCTCA AAACAATGAC
TTAACTTTTG CTTCAGCCTT TAAATTTTTA GAGAGTTTAA ATAATGTAGC TAAGGATTAT
CCAGATAAAA ACTTTGCTAT AGTAGATACT ATATCAGACC TTCCAAATGT AAAATCAATA
GATTTTAAGG ATGAAGAGGG TGCATTTCTA ATGGGTATAA TAGCAGGGAA TGCTACTAAA
ACAAATAAGG TAGGATTTAT AGGTGCAATA AAGGAAGAAT CAATAGAAAG ATTTTCATCA
GGATTTATGG CTGGACTAAA GGTTTCAAAT GAGGAAGCCT ATAAAAACAT AAGAGAAGGA
AATTTAGTTC AGTATATAGG AAACTTTAAT GATCAAAAGA AAGCAAGTGA TATAGCTAAA
AAAATGTATG ATGAAGGGGC AGATATAATA TTTGAATCAG CAGGAGAAGC TGGAAAAGGA
CTTTTTAGAG CTGCTAAGGA AAAGGGAAAG TATGCCATAG GAGCTGATAT TGATTGGGCA
GAAAGATTTC CAGAGTATGC TAATGTTATA TTATCATCAA TGATAAAGAA TCTAGATGAA
GCAGTATATA CTACAGCAAA AGAAGTTATA AATAGTGATT TTAAAGCTGG TCCAAATAAC
AAAATGGAAA TAGGCCTTAA GGATAATGGG ATTGAGATAG CTAAGACAAC AAGTAATTTA
GTTTCTAAGG AAATTTTAGA TAAGGTAGAA AAGTATAGAG TTTCTATTAT AAATGGAGAA
TTTAATGTAC CAAAGACCTT AGATGAGGTT GAAAATTTTA ATATTAAGTA A
|
|---|
| Protein sequence | MKLKKTFKVL ALLLGVTSII VGCGANNSSA LKKADIIEKQ VYNFALVKDD FSNEENYFAD
SAVEGLERIK KEYSAEIEVF DTNSSEDYEK RLREAAQNND LTFASAFKFL ESLNNVAKDY
PDKNFAIVDT ISDLPNVKSI DFKDEEGAFL MGIIAGNATK TNKVGFIGAI KEESIERFSS
GFMAGLKVSN EEAYKNIREG NLVQYIGNFN DQKKASDIAK KMYDEGADII FESAGEAGKG
LFRAAKEKGK YAIGADIDWA ERFPEYANVI LSSMIKNLDE AVYTTAKEVI NSDFKAGPNN
KMEIGLKDNG IEIAKTTSNL VSKEILDKVE KYRVSIINGE FNVPKTLDEV ENFNIK
|
|---|
| |