| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPR_1303 |
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| Symbol | rpoN |
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| ID | 4205088 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium perfringens SM101 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008262 |
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| Strand | - |
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| Start bp | 1473975 |
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| End bp | 1475360 |
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| Gene Length | 1386 bp |
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| Protein Length | 461 aa |
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| Translation table | 11 |
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| GC content | 28% |
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| IMG OID | 642565859 |
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| Product | RNA polymerase factor sigma-54 |
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| Protein accession | YP_698625 |
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| Protein GI | 110803124 |
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| COG category | [K] Transcription |
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| COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
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| TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.357078 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTAATGG ATTTTAATTT GAATTTAACT CAAGAGCAAA AGCTTATTAT GACCCAGCAA
ATGCAACTTT CAATAAAACT TTTACAAATG TCAACATATG ATTTAAGAGA ATATATTGAA
AAAGAATTTT CAGAAAATCC TGTATTAGAA GCTCAGTATG AGGGTACTAA AGAGGTGTCA
AAAGAGCAAG ATAGATTAGA ATATAAAGAG TTATTAAAAT ACTTAGAGTC AGATAATTAT
GGTTCTCAAA GTTATGGTGA ATATGATGAT GAAGAAATAT CACCTTTTAC TTTCATAAGT
AAGCCAGAAT CTTTAACAGA TTATTTAGAA GGGCAAATAT TAGAACTACC CATAGACGAA
TATATGAGAA GTGTATGTAG TTATATGGTT GAGTGTTTAG ATCAAAAGGG ATATTTAGAT
ATAAAAAAAG AAGAATTAAT TAATGAGCTA GATTGTTCTG AAGAGACTTT TAATAGGGCT
TTAATAGTTA TTCAAAACTT AGAACCTGCT GGTATAGGAG CAAGAGATTT AAAGGAATGC
TTAGAAATTC AGTTAGAAAG AAAAGGTGAA AATGACCCTA TAGTTAAAGA GATTATATAT
AATCATTTAG ATGATTTAGC AGATAATAAA TATCAAGTTA TTGCAAAGGA TTTAGGAATT
ACTCCTAAAA AAGCACAAGA TTATGGAGAT TTGATAAAAA CTTTAGAACC AAAACCATCA
AGAGGCTTTT ACACTGGTGA CGAAGTAGGG TTTATAATTC CTGATGCAGA AATACGAAAG
ATAGATGGAG AATTCCTCAT ATTAATGAAT GATGGAGTTT TACCTATGCT TTCAGTTAAT
CCTTTATATA AAGCTATATT AAAAGATAGT ACTAATGATA AAGAGGCTAC AGAGTATGTA
AAGGAAAAAA TAGAAAAAGC TATGTTTTTA ATTAAAAGTA TAGAGCAAAG AAAAAGTACT
TTATACAAAG TTCTGCAAAA AATACTTGAA AAGCAAAAGG ATTATTTTGA AAAGGGAGAG
AAATATTTAA AGCCTATGAC TTTAAAAGAA ATAGCTGAGA AACTAGAAAT GCATGAATCA
ACTATTTCAA GAGCTATAAG AGATAAGTAT ATTTTAACTT CTATGGGAAC AATAAAAATA
AAGAATCTCT TTGTAAACTC AATAAGTAAT AAAGAAAAAA GTCATGGAGA AGAAGATGTT
ACAGTTATAA ATATAAAAAA AGCTTTAGAA GAAGTAATTA AGAAAGAGGA TAAAAGGAAG
CCCTTATCAG ATCAAGCCAT AAGCGAAATT TTAAAAGAAA AAGGAATGGT TATTTCAAGA
AGAACTGTGG CAAAATACAG AGAAGAGTTA GGCATAAAGT CATCTAGCAA GAGAAAAAGA
TTTTAA
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| Protein sequence | MLMDFNLNLT QEQKLIMTQQ MQLSIKLLQM STYDLREYIE KEFSENPVLE AQYEGTKEVS
KEQDRLEYKE LLKYLESDNY GSQSYGEYDD EEISPFTFIS KPESLTDYLE GQILELPIDE
YMRSVCSYMV ECLDQKGYLD IKKEELINEL DCSEETFNRA LIVIQNLEPA GIGARDLKEC
LEIQLERKGE NDPIVKEIIY NHLDDLADNK YQVIAKDLGI TPKKAQDYGD LIKTLEPKPS
RGFYTGDEVG FIIPDAEIRK IDGEFLILMN DGVLPMLSVN PLYKAILKDS TNDKEATEYV
KEKIEKAMFL IKSIEQRKST LYKVLQKILE KQKDYFEKGE KYLKPMTLKE IAEKLEMHES
TISRAIRDKY ILTSMGTIKI KNLFVNSISN KEKSHGEEDV TVINIKKALE EVIKKEDKRK
PLSDQAISEI LKEKGMVISR RTVAKYREEL GIKSSSKRKR F
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