| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPR_1288 |
|---|
| Symbol | |
|---|
| ID | 4206026 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium perfringens SM101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008262 |
|---|
| Strand | + |
|---|
| Start bp | 1456423 |
|---|
| End bp | 1457412 |
|---|
| Gene Length | 990 bp |
|---|
| Protein Length | 329 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 26% |
|---|
| IMG OID | 642565844 |
|---|
| Product | TPR repeat-containing protein |
|---|
| Protein accession | YP_698610 |
|---|
| Protein GI | 110803892 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4783] Putative Zn-dependent protease, contains TPR repeats |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.130508 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTTCAT TTCAATCATT AATAATAATG CTTATATGTA TTTTATCCAT AATTATAATT
TTATATTTAA TCGAGTCAGA TAATTTTCTG CTAGAAAAAC AAATAAGTAA ATATATATCT
CTAGGAAAAT TTAAACATGC TCTTTATCTT TTAGACAAGT ATTCAGAAAA ATTAGATCCT
CTATTTTTCC ATAATAATAA AATTTTAATA CTATCAAAGC AAAAAGATTT TGATGCAGCC
TATGAAATTT CCATAGAGGC AATAAAAAAG CTTAAAGAAC CTAACTATGA ACTTTACAAT
AATATTGCAT TTGTATATTA CAATCTAAAA CTTTATAATA GAGCCATAGA TTTTTCAGAA
AGAGCCTTAA AATTAAATCC TATAGATACC TTTGCTTTAA ACAATAAAGG TTTCTCTTAT
ATTGAAATAG GCGAATACTC TAAAGCTGAG GAATGTTTTG ATAAAGCATT AGAATTTAAT
CCTTATTTTA AAAATGCCTT ATTTGGAAAG GCATATTGCG CTTTTGAAAA GAGTGATTAT
CTTCTTGCTA CTAAATATCT TCAAGATTTT GTTTCAATTG AAAAAAATAA TGCCTCTGCC
TATAAAAAAT TAGGAGAATG TTACTTTATT TTAAATGACT TAAAAAACAG TTCTAAAATG
TATGAGAAAT CCTTAGAAAT AGACCAAGAA AATGATGCTT CTTATTGTGA ATATGCAAAT
GTACTTCTTT GCTTAGGTCA CTATGATAAG GCACTAAACA ATTTAAATAA GGCCCTTGCC
ATATCACCCT ATAACTTTAT GGCCTTTTAT TATAAAGCAA GAGCTTACTC CTTAAAGAAA
GATTTTGATA ATGCATTTTA TTATTTAGAA AGGGCCTTTA ACTATTGTGA CTCCTTAAAA
GAAATAGCTC TTAAGGATGA AATGCTTACA AACTTAAAGT TTTTCTCAAA GTTTAGTGAG
TTATTAGAAA TTCATAATAT AAAAAACTAA
|
|---|
| Protein sequence | MTSFQSLIIM LICILSIIII LYLIESDNFL LEKQISKYIS LGKFKHALYL LDKYSEKLDP
LFFHNNKILI LSKQKDFDAA YEISIEAIKK LKEPNYELYN NIAFVYYNLK LYNRAIDFSE
RALKLNPIDT FALNNKGFSY IEIGEYSKAE ECFDKALEFN PYFKNALFGK AYCAFEKSDY
LLATKYLQDF VSIEKNNASA YKKLGECYFI LNDLKNSSKM YEKSLEIDQE NDASYCEYAN
VLLCLGHYDK ALNNLNKALA ISPYNFMAFY YKARAYSLKK DFDNAFYYLE RAFNYCDSLK
EIALKDEMLT NLKFFSKFSE LLEIHNIKN
|
|---|
| |