| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPR_1197 |
|---|
| Symbol | pyrD |
|---|
| ID | 4205981 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium perfringens SM101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008262 |
|---|
| Strand | - |
|---|
| Start bp | 1342587 |
|---|
| End bp | 1343486 |
|---|
| Gene Length | 900 bp |
|---|
| Protein Length | 299 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 32% |
|---|
| IMG OID | 642565753 |
|---|
| Product | dihydroorotate dehydrogenase 1B |
|---|
| Protein accession | YP_698519 |
|---|
| Protein GI | 110803925 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0167] Dihydroorotate dehydrogenase |
|---|
| TIGRFAM ID | [TIGR01037] dihydroorotate dehydrogenase (subfamily 1) family protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.0733416 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTAAAAA CAGTTATAAA TGGAGTAGAT TTTAAAAACC CTGTTATAGC AGCATCAGGT
ACTTTCGGCT TTGGAGCTGA GTACAATAAC TTCTATGATG TGGGAGAATT AGGAGGAATA
AGTTCAAAAG GATTAACTCT TAAGGGTAGA GAAGGTAATG AAGGAATAAG AATATATGAA
ACTCCTCAAG GAATAATGAA TTCAGTAGGA CTTCAAAATC CAGGAATAGA GAAATTTATA
GAAGTAGAAC TTCCTAAAAT GTTAGAGCTA GGAACAAATA TAATAGCCAA TGTAGGGGGA
GCTACTATAG AGGATTATGA AAAAGCTGTA TCTCTTTTAA ATAAAGAAAA AATAGACATG
ATAGAACTAA ACATATCTTG TCCTAATGTA AAATCAGGTG GAATGGCCTT TGGAATAAAA
TCAGACGTAG CCTATGAAGT GGTTTCTAAG GTAAGAAAAA TATGTGATAA ACCTTTAATG
GTAAAATTAT CACCAAATGC TGAAGATATA TGCAATATGG CATATAGATG TGCAGAGGCA
GGAGCAGATT CAATTTCACT AATAAATACA TTAAAAGGAA TGGCAATAGA TATAAAAAAT
AGAAAGCCAG TATTTAATAA TGTGTATGCA GGACTTTCTG GCCCAGCTGT AAAACCTATA
GCACTTAGAA TGGTTCATGA AGTAGCTAAA ACTGTAGATA TTCCAGTAAT AGGATTAGGA
GGAATTTCTA CAGCAGAGGA TGCCATAGAA TTTATGATGG CAGGAGCTAA AGCTATACAA
ATAGGTACAA TAAACTTTGT AAATCCTAAA GCAGGTATAG AAATAATAAA AGGCTTAGAA
GACTTTTGCA AAAAAGAAGG ACTAAAAAAT ATTAATGAAA TTGTAGGATG CATAAAGTAA
|
|---|
| Protein sequence | MLKTVINGVD FKNPVIAASG TFGFGAEYNN FYDVGELGGI SSKGLTLKGR EGNEGIRIYE
TPQGIMNSVG LQNPGIEKFI EVELPKMLEL GTNIIANVGG ATIEDYEKAV SLLNKEKIDM
IELNISCPNV KSGGMAFGIK SDVAYEVVSK VRKICDKPLM VKLSPNAEDI CNMAYRCAEA
GADSISLINT LKGMAIDIKN RKPVFNNVYA GLSGPAVKPI ALRMVHEVAK TVDIPVIGLG
GISTAEDAIE FMMAGAKAIQ IGTINFVNPK AGIEIIKGLE DFCKKEGLKN INEIVGCIK
|
|---|
| |