Gene CPR_1164 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCPR_1164 
SymbolcitE 
ID4204150 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameClostridium perfringens SM101 
KingdomBacteria 
Replicon accessionNC_008262 
Strand
Start bp1308809 
End bp1309699 
Gene Length891 bp 
Protein Length296 aa 
Translation table11 
GC content34% 
IMG OID642565720 
Productcitrate lyase, beta subunit 
Protein accessionYP_698486 
Protein GI110802680 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2301] Citrate lyase beta subunit 
TIGRFAM ID[TIGR01588] citrate lyase, beta subunit 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.421072 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCAAGAT TAAGAAGATC AATGATGTTT GTACCTGGAA GTAAGCCTGC TATGATAAAA 
GATTGTACTA TATATGGTGC TGATTCTGTA ATGTTTGACT TAGAAGACTC AGTTTCTATA
GCAGAAAAGG ATTCTGCAAG AAGATTAGTT TATCATGCCT TAACATCTAT GGATTTTGGA
GATACAGAAA CAGTAGTCCG TGTTAATGCT TTAGATTCAG ACTTTGGTAT TGAAGATTTA
AAAGCAATTG TAAGAGCACA GCCAGACGTT ATACGTTTAC CTAAAACTGA AACTGCTCAA
GATGTTTTAG ATATGGAGAA GGTTATTGCC TCTATAGAAG AAGAAATAGG TCTCCCTATT
GGAAAAACTA AAATGATGGC TGCTATAGAA TCAGCCTTAG GTGTTTTAAA CGCTTATGAA
ATAGCAACCT CTTCAAAACG TTTAATGGGG ATTGCCTTAG GTGCTGAAGA TTTTGTAACT
GATATGAAAA CTCATAGATC TCCTGAAGGT AATGAACTTT TTGCAGCACG TAGTCATATA
ATATTAGCTT CAAGAGCGGC TAAAATTTCA GCTTTTGATA CAGTTTATTC TGATGTAAAT
AATGAAGAGG GCTTTATTAA GGAAGCAACA TTAATAAAAC AACTAGGATT TGATGGAAAA
TCCTTAATAA ACCCAAGACA AATAGACTTA TTACATAAAG TTTTTGAACC TACTGAAAAA
GAAATTGATA AGGCAATAAA AATTATAGAA GCTGCTAAAG AAGCAGAAAA ACGTGGCTCA
GGCGTTGTAT CTCTTAATGG GAAAATGATT GATAAGCCAG TAATAGCAAG GGCAGAAAGA
GTTCTTATGT TAGCTAAGGC TTCAGGAATA TCATATGAAA AGGAAGTGTA A
 
Protein sequence
MPRLRRSMMF VPGSKPAMIK DCTIYGADSV MFDLEDSVSI AEKDSARRLV YHALTSMDFG 
DTETVVRVNA LDSDFGIEDL KAIVRAQPDV IRLPKTETAQ DVLDMEKVIA SIEEEIGLPI
GKTKMMAAIE SALGVLNAYE IATSSKRLMG IALGAEDFVT DMKTHRSPEG NELFAARSHI
ILASRAAKIS AFDTVYSDVN NEEGFIKEAT LIKQLGFDGK SLINPRQIDL LHKVFEPTEK
EIDKAIKIIE AAKEAEKRGS GVVSLNGKMI DKPVIARAER VLMLAKASGI SYEKEV