| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPR_1164 |
|---|
| Symbol | citE |
|---|
| ID | 4204150 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium perfringens SM101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008262 |
|---|
| Strand | + |
|---|
| Start bp | 1308809 |
|---|
| End bp | 1309699 |
|---|
| Gene Length | 891 bp |
|---|
| Protein Length | 296 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 34% |
|---|
| IMG OID | 642565720 |
|---|
| Product | citrate lyase, beta subunit |
|---|
| Protein accession | YP_698486 |
|---|
| Protein GI | 110802680 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2301] Citrate lyase beta subunit |
|---|
| TIGRFAM ID | [TIGR01588] citrate lyase, beta subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.421072 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCAAGAT TAAGAAGATC AATGATGTTT GTACCTGGAA GTAAGCCTGC TATGATAAAA
GATTGTACTA TATATGGTGC TGATTCTGTA ATGTTTGACT TAGAAGACTC AGTTTCTATA
GCAGAAAAGG ATTCTGCAAG AAGATTAGTT TATCATGCCT TAACATCTAT GGATTTTGGA
GATACAGAAA CAGTAGTCCG TGTTAATGCT TTAGATTCAG ACTTTGGTAT TGAAGATTTA
AAAGCAATTG TAAGAGCACA GCCAGACGTT ATACGTTTAC CTAAAACTGA AACTGCTCAA
GATGTTTTAG ATATGGAGAA GGTTATTGCC TCTATAGAAG AAGAAATAGG TCTCCCTATT
GGAAAAACTA AAATGATGGC TGCTATAGAA TCAGCCTTAG GTGTTTTAAA CGCTTATGAA
ATAGCAACCT CTTCAAAACG TTTAATGGGG ATTGCCTTAG GTGCTGAAGA TTTTGTAACT
GATATGAAAA CTCATAGATC TCCTGAAGGT AATGAACTTT TTGCAGCACG TAGTCATATA
ATATTAGCTT CAAGAGCGGC TAAAATTTCA GCTTTTGATA CAGTTTATTC TGATGTAAAT
AATGAAGAGG GCTTTATTAA GGAAGCAACA TTAATAAAAC AACTAGGATT TGATGGAAAA
TCCTTAATAA ACCCAAGACA AATAGACTTA TTACATAAAG TTTTTGAACC TACTGAAAAA
GAAATTGATA AGGCAATAAA AATTATAGAA GCTGCTAAAG AAGCAGAAAA ACGTGGCTCA
GGCGTTGTAT CTCTTAATGG GAAAATGATT GATAAGCCAG TAATAGCAAG GGCAGAAAGA
GTTCTTATGT TAGCTAAGGC TTCAGGAATA TCATATGAAA AGGAAGTGTA A
|
|---|
| Protein sequence | MPRLRRSMMF VPGSKPAMIK DCTIYGADSV MFDLEDSVSI AEKDSARRLV YHALTSMDFG
DTETVVRVNA LDSDFGIEDL KAIVRAQPDV IRLPKTETAQ DVLDMEKVIA SIEEEIGLPI
GKTKMMAAIE SALGVLNAYE IATSSKRLMG IALGAEDFVT DMKTHRSPEG NELFAARSHI
ILASRAAKIS AFDTVYSDVN NEEGFIKEAT LIKQLGFDGK SLINPRQIDL LHKVFEPTEK
EIDKAIKIIE AAKEAEKRGS GVVSLNGKMI DKPVIARAER VLMLAKASGI SYEKEV
|
|---|
| |