Gene CPR_1108 details

Gene Information

• Locus tag: CPR_1108
• Symbol: cobT
• ID: 4205195
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Clostridium perfringens SM101
• Kingdom: Bacteria
• Replicon accession: NC_008262
• Strand: +
• Start bp: 1253340
• End bp: 1254425
• Gene Length: 1086 bp
• Protein Length: 361 aa
• Translation table: 11
• GC content: 30%
• IMG OID: 642565664
• Product: nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase
• Protein accession: YP_698430
• Protein GI: 110803287
• COG category: [H] Coenzyme transport and metabolism
• COG ID: [COG2038] NaMN:DMB phosphoribosyltransferase
• TIGRFAM ID: [TIGR03160] nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 0.39508
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTTAAATG AGGTGTTAAA AGGAATACAA GGTTTAGATA ATGACATGAT TTTAAAAGCT 
AAAAATAGAG TGGATTCTTT AGCTAAACCT TTAGGAAGTT TAGGAAAGTT AGAAGATATA 
GCTATAAGGT TATCTGGAAT AACTGGAAAT ATGTTTAATA ATATTGATAA AAAGTGTGTA 
ATTATAATGT CTTCTGACAA TGGAGTTGAA GAAGAAGGCG TAGCCTCAGC GCCTCAATGT 
TTAACTTTAC TTCAAACAAA AAATTTTATA AAAGGTATTA ATGGAGTAGG TACATTGGCA 
AAAACTAATG GAACAGATTT AATAGTTTTT GATGTAGGAA TTAATTCAGA TGAAGTTATA 
GAAGGAGTTA TAGATAGAAA GATATCAAAG GGAACTAAAA ATATTTATAA GGAACCAGCT 
ATGACTTATG AAGAAGCTAA AAAATCCTTA GAAATTGGAA TAGAAGCTGT AAAAATAGCT 
AAGGAAAAGG GATATAAAAT ACTTGGAGTA GGTGAAATGG GAATAGGAAA TACCACTACT 
TCAGCAGCAG TATTAAAAGC CCTTATTGGG TGTGAAACTT CTAAAGTCGT AGGAAAAGGT 
GGCGGAATAA ATAATGCTTC TTTTGAAAAG AAAAAAATAA TTGTAGAAGA AGTGGTTAAA 
AAACATAATA TTGATTTTGA TGATCCTATT GATATTATTT CAAAGGTTGG AGGATATGAT 
ATTGGAGCAA TGGCAGGGGT ATTTTTAGGT GCTGCTTTCT ATAGAATCCC TGTAGTAATA 
GATGGGTTTA TATCTGTTGT GGCAGCTCTT TTAGCTAATA GATTAAATCC TTTAGTTAAA 
GAATTTTGTT TTACATCTCA TAAGTCACAA GAAATAGGAT ATGATTTAGC TATAAAAGAG 
TTAGGATTAG ATCCTATATT AGATTTAAAT ATGAGATTAG GAGAAGGAAG TGGATGCCCA 
ATAGCTTTCT CAGTAATTAA TTTTGCAATA TCCATGATGA ATAATATGGC AACTTTTGAA 
GAAGTAAATA TAGATAATAG TTATTTAGAG GATGTAAAGG ATAAAGAGTG TTACGTTGTT 
CTTTAA 

 

Protein sequence

MLNEVLKGIQ GLDNDMILKA KNRVDSLAKP LGSLGKLEDI AIRLSGITGN MFNNIDKKCV 
IIMSSDNGVE EEGVASAPQC LTLLQTKNFI KGINGVGTLA KTNGTDLIVF DVGINSDEVI 
EGVIDRKISK GTKNIYKEPA MTYEEAKKSL EIGIEAVKIA KEKGYKILGV GEMGIGNTTT 
SAAVLKALIG CETSKVVGKG GGINNASFEK KKIIVEEVVK KHNIDFDDPI DIISKVGGYD 
IGAMAGVFLG AAFYRIPVVI DGFISVVAAL LANRLNPLVK EFCFTSHKSQ EIGYDLAIKE 
LGLDPILDLN MRLGEGSGCP IAFSVINFAI SMMNNMATFE EVNIDNSYLE DVKDKECYVV 
L