| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPR_1035 |
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| Symbol | |
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| ID | 4204943 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium perfringens SM101 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008262 |
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| Strand | - |
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| Start bp | 1177773 |
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| End bp | 1179407 |
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| Gene Length | 1635 bp |
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| Protein Length | 544 aa |
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| Translation table | 11 |
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| GC content | 21% |
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| IMG OID | 642565592 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | YP_698358 |
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| Protein GI | 110801973 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.00577049 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAATA AAAAAAAGAA ATATTTATTA ATTTTATTAA TTTTTTTAAT AGTTATTAAT
TTATTTATAT TTTCTTTTTA TAAATTTAAA TCAAATAAAA AAAATAAAAA ATATATAGAG
AAAACTAATT CAATTTTATA TGAATTTAAA TTATATATGA AAAAAAGAGA TTTTAAAAAT
TGTGAAAATA AACTTTACTC AATTGTAAAT AATAAAGATA TGTTTTATAG TTTACCTGAT
AATTTAAAGT TCGAGATTTA TAATTATTTA GCTATAATAA ATCTTCAACA AGAAAAATTT
TTAAATGCTT TATCTTATTA TGAAGAAGCC TTTAAATATG CTGATAAAGA GTCAAAGATA
ATTATTAAGC TAAACATGAC ATCTGCTTAT AGATATATGG GGGCCTATGT TACTGCTACT
AATATTTTAA ATAAAATGAT AGAGTCATCA TTAACTTTTA AAAATGAAAA TTCTTATCTT
AAAGAATATA CTCTATTAAA TTTAGCTGAA ACTTATTTTG CTGTAAATGA TATAACTGAC
TTTAATTCTA CAATAGAAAC TATATCGAAA TATTATTGTG GGCCTGAAAA TGAGTTAGCA
GATCTAAAAA TACTTTTAGA TTCCTATTTA ATAATAAAAG CAATATCAGA GAATAACCTT
GATTTAGTAC CAAAATACAT TTCTGAAATA GATGAATTAG AAAGTAAAAA TAAAGATCTC
ATATATTCAG AATTAGAAAT GATTAAACTT CGTTCATATG GTATGTATTA TGAAAGCATA
GGAAATTTCA ATTTAGCATT AGATTATTTT TCCAAATTAG AAAAATCAGC TGATAATGAA
GGTGCTTCTT ATGTTTCGCT TTTTTCTATA AGCAAAAGAA TTTCTATCTA TAAAAAATTA
AATGATACTT ATAAAATAAA TTATTTAATA AATAAATATT ATGAAAAACA AACTTCAATA
AATGACATAA ATAATAATGA ATTTAAATAC TATATAGATA ATAAAATTAT AAACAATCAT
GAGTTACCAT TTTTAAAAGA AACAATTATT ATTTTAACAA TTCTATTTTT AATCTCTATT
TTATTAGTGC TTTTTTACTT AAAGAAAGCT CGGGATTCAA AATTAGATTC TTTAAAAGAT
GGACTTTGCA ATATTTACAA TAGGCGTTTT TTAGACTCTT ATATAAATAA TTTAAAAGAA
AAGGATCTAC CTATTTCTTT TTTAATGATA GATGTAGATT ATTTTAAACT TTATAATGAT
AACTATGGTC ATCAAGCAGG TGATTTTGTG CTAAAAAGCA TATCTTCTGT ATTAAAAAGA
AATTCTCGTA AGGAAGATAT AGTTTCACGT TATGGAGGAG AAGAATTTTG TGTTTTACTA
AAAGGAGCTT CTAAACATTC TTCTATTAAT TACGCTAAAA GAATCAAAGA AAATTTAGAT
AATTTAAATA TAAAGCATAA ATACTCAAAA ATTTCTAACA ATGTAACCTT TAGTATAGGA
ATATATACTA CATATACTAA AAACGATCTA AAAAATGCTA TTAAACTTTC TGATAAAGCA
CTATATATAT CTAAAACAAG AGGGAGAAAT ACATATACTT ATCTAGAAGA TAACTCTTCT
GATTCTTCTA ATTAA
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| Protein sequence | MKNKKKKYLL ILLIFLIVIN LFIFSFYKFK SNKKNKKYIE KTNSILYEFK LYMKKRDFKN
CENKLYSIVN NKDMFYSLPD NLKFEIYNYL AIINLQQEKF LNALSYYEEA FKYADKESKI
IIKLNMTSAY RYMGAYVTAT NILNKMIESS LTFKNENSYL KEYTLLNLAE TYFAVNDITD
FNSTIETISK YYCGPENELA DLKILLDSYL IIKAISENNL DLVPKYISEI DELESKNKDL
IYSELEMIKL RSYGMYYESI GNFNLALDYF SKLEKSADNE GASYVSLFSI SKRISIYKKL
NDTYKINYLI NKYYEKQTSI NDINNNEFKY YIDNKIINNH ELPFLKETII ILTILFLISI
LLVLFYLKKA RDSKLDSLKD GLCNIYNRRF LDSYINNLKE KDLPISFLMI DVDYFKLYND
NYGHQAGDFV LKSISSVLKR NSRKEDIVSR YGGEEFCVLL KGASKHSSIN YAKRIKENLD
NLNIKHKYSK ISNNVTFSIG IYTTYTKNDL KNAIKLSDKA LYISKTRGRN TYTYLEDNSS
DSSN
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