Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPR_1020 |
Symbol | |
ID | 4204468 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium perfringens SM101 |
Kingdom | Bacteria |
Replicon accession | NC_008262 |
Strand | + |
Start bp | 1162700 |
End bp | 1163389 |
Gene Length | 690 bp |
Protein Length | 229 aa |
Translation table | 11 |
GC content | 27% |
IMG OID | 642565577 |
Product | DNA-binding response regulator |
Protein accession | YP_698343 |
Protein GI | 110802452 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.00028316 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATTAATT CAGAAAGTAT TTTAGTAGTT GAAGATGATA TAGATATAAA TAATTTATTG AGTAAAATTT TAGAGAAGGA AGGGTTTAAA GTTAGACAAG CATTTTCAGG ATCTGAAGGT AAGATGTGTT TAGAATTTTT TGATTTTGAT ATGGTACTTT TAGATCTTAT GCTACCAGGT ATAACTGGTG AAATATTTAT AGATGAGATT AGAAAGATAA AGAACACTCC AATAATAGTT ATATCAGCAA AAACTACAAT GGAGGATAAG ATAAATGTTT TAAAATTAGG TGCTGATGAT TTTATAAGTA AACCTTTTGA TGTTAATGAA GTTTTAGCTA GGGTTGAAGC GCTTTTAAGA AGAAGTAAAA TAACAAATTC AAGTGAAGGT GTAGAGACAA TAAAATATAA GAACCTTATA TTAGAACCTA GAAGTAGAGA AGTTAAGGTT AAGGGAGAGG AAATACAACT TACTTCCAAA GAGTTTAAAA TATTAGAACT TTTAGTTTGT AATCCAAAGA AAGTTTTTAC TAAGGCAAAC TTATTTGAAA CAGTATGGGA AGAGGAGTTT TTAGGTGATG ATAATACTAT AAATGTTCAC ATAAGCAACC TTAGAAATAA GATAAATCTT TTAGATAATG AAAATGATTA TATAAAAACT ATTTGGGGAG TAGGATTTAA AATGGATTAG
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Protein sequence | MINSESILVV EDDIDINNLL SKILEKEGFK VRQAFSGSEG KMCLEFFDFD MVLLDLMLPG ITGEIFIDEI RKIKNTPIIV ISAKTTMEDK INVLKLGADD FISKPFDVNE VLARVEALLR RSKITNSSEG VETIKYKNLI LEPRSREVKV KGEEIQLTSK EFKILELLVC NPKKVFTKAN LFETVWEEEF LGDDNTINVH ISNLRNKINL LDNENDYIKT IWGVGFKMD
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