Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPR_0877 |
Symbol | |
ID | 4204180 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium perfringens SM101 |
Kingdom | Bacteria |
Replicon accession | NC_008262 |
Strand | - |
Start bp | 1012783 |
End bp | 1013931 |
Gene Length | 1149 bp |
Protein Length | 382 aa |
Translation table | 11 |
GC content | 32% |
IMG OID | 642565436 |
Product | sialidase |
Protein accession | YP_698202 |
Protein GI | 110802436 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG4409] Neuraminidase (sialidase) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.0420038 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCGTAACA AAAACAACAC CTTTGAAAAA AATCTAGATA TAAGCCATAA ACCAGAACCA CTAATACTAT TTAACAAGGA TAGTAACATA TGGAATTCAA AGTATTTTAG AATTCCCAAT ATACAATTAT TAAATGATGG CACAATTTTA ACCTTTTCAG ATATTCGTTA TAATGGCCCT GATGACCATG CTTATATAGA CATAGCTTCT GCACGCAGTA CTGATTTTGG AAAGACATGG AGCTATGATG TAGCAATGAA AAATAATCGT ATTGACTCTA CTTATTCTCG TGTAATGGAC TCCACAACAG TTATTACAAA TACAGGTAGA ATAATATTAA TTGCAGGCTC ATGGAATACA AATGGAAACT GGGCAATGAC TACTTCTGCA AGAAGAAGTG ATTGGTCTGT TCAAATTATT TATTCTGATG ATAATGGATT AACTTGGTCT AACAAAATAG ATTTAACCAA GGACTCATCA AAAGTAAAAA ATCAACCAAG TAATACAATT GGATGGCTAG GAGGAGTTGG CTCAGGTATT GTAATGGATG ATGGAACAAT AGTTATGCCA GCACAAATTT CCTTAAGAGA AAATAATGAA AATAACTATT ATTCATTAAT TATCTATTCA AAGGATAATG GTGAAACATG GACAATGGGA AACAAGGTTC CTAATTCAAA TACTTCTGAA AATATGGTCA TAGAATTAGA TGGAGCTTTA ATTATGAGTA CAAGATATGA TTACTCTGGT TATAGGGCAG CATACATCTC TCACGATTTA GGAAGCACCT GGGAAATATA TGAACCTTTA AACGGTAAAG TTTTAACTGG TAAGGGCTCT GGATGCCAAG GTTCATTTAT TAAAGCTACT ACTTCAAATG GACATAGAAT AGGATTAATT TCAGCACCTA AAAACACTAA AGGTGAATAT ATAAGAGACA ATATTGCTGT TTATATGATT GACTTTGATG ATTTATCTAA AGGTGTTCAG GAAATATGTA TTCCTTACCC TAAAGATGGT AACAAATTAG GCGGTGGCTA TTCTTGTCTA TCCTTTAAAA ATGACCATTT AGCCATTGTT TATGAAGCCA ACGGAAATAT AGAATATCAA GACTTAACAC CTTATTACTT ACTAATTGAT AAAGAATAA
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Protein sequence | MRNKNNTFEK NLDISHKPEP LILFNKDSNI WNSKYFRIPN IQLLNDGTIL TFSDIRYNGP DDHAYIDIAS ARSTDFGKTW SYDVAMKNNR IDSTYSRVMD STTVITNTGR IILIAGSWNT NGNWAMTTSA RRSDWSVQII YSDDNGLTWS NKIDLTKDSS KVKNQPSNTI GWLGGVGSGI VMDDGTIVMP AQISLRENNE NNYYSLIIYS KDNGETWTMG NKVPNSNTSE NMVIELDGAL IMSTRYDYSG YRAAYISHDL GSTWEIYEPL NGKVLTGKGS GCQGSFIKAT TSNGHRIGLI SAPKNTKGEY IRDNIAVYMI DFDDLSKGVQ EICIPYPKDG NKLGGGYSCL SFKNDHLAIV YEANGNIEYQ DLTPYYLLID KE
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