| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPR_0594 |
|---|
| Symbol | |
|---|
| ID | 4204911 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium perfringens SM101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008262 |
|---|
| Strand | + |
|---|
| Start bp | 711069 |
|---|
| End bp | 712937 |
|---|
| Gene Length | 1869 bp |
|---|
| Protein Length | 622 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 27% |
|---|
| IMG OID | 642565154 |
|---|
| Product | choline/ethanolamine kinase family protein |
|---|
| Protein accession | YP_697921 |
|---|
| Protein GI | 110801960 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0510] Predicted choline kinase involved in LPS biosynthesis
[COG4750] CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0311348 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTATCAT ATGATATTGA AGTTTTAAAG ATTATAAATG ATGAAGATAA TATAAGTCAA
AGAAGATTAG CAGAAATGTT AAATCTTTCT TTAGGTAAAA TAAATTCTTT ACTTAAGGAA
CTATTGACTA AAGAATACAT AGTTAAAATT GATATAGATA AGAGAAATGT TAAATATGAA
TTAACTGAGG CAGGAATTGC ATTACTAGAA AATTCATTAG ATAAAGTTAA AAGCACAAAA
TTATCAATAC ATAAGCATAA ATTTCATAAA GTTAAACAAG CTATTATTTT AGGAGCTGGT
GGTAAAGGTG ATTTTGGAAA GCCAGCTGGT TTTTTAGAGC TTGAAGAATT CAGAATAATT
GATAGAATAA TTGATATTTT GAAATCAAAT GGTATAGAGA AGATTGTTAT AGTAAATGGA
TATAAGAAAG AATACTATGA AGAATTAGCT AAAAAAGATT CAACAATTTT TTGTGTAACT
AATTCAAATT ATAAATGGAC AGGAACTATG AGTTCTTTAG CTTTAGCTAA GGAATATATA
GATGATGATT TTATATTGGT AGAAAATGAT CTTGTTTTTG AAAGTAGAGC TGTAGAACAA
ATTATTAAAA ATGATAATAG AGATTGTGTT TTAATTACTA ATGAAAGTGG ATCAGGGGAT
GAGGCCTTCG TTGAAATAAG AGATGGCTAT CTTTTTAAAA TGTCAAAAGA TGTACACCAA
TTTAATAAGA TTGATGGAGA AATGATTGGT ATAAGCAAAA TATCTTATAA ATTATTTAAA
ATGATGTTAG AAGAATTTAA ACATAATATA AATCCATATA TGAATTATGA GTACACTATG
TTAGATGTTG CTAGAAATTA TAAGGTTGGT TATGAAAAGA TAAATGACCT TGTTTGGGGA
GAAATTGACA ATAAAGATCA ATATGAAAAA GTAAAGAAAC ACATTATACC TATGATAAGA
AGAAAAGAAA TGCAATATAA AATAGATCAA GTAAAAAGTG CTATAGTTAA TGGATTAAAG
GTTTCAGAAG AGGAAGTTAA AGAAATAGTA CCTGTAGGAG GTATGACTAA TAAAAACTAT
AAGGCTTTTG TAAATGACAA AGCTTATATA GTAAGAATAC CAGGATTAGG TACAAGCTCT
ATGATTAATA GAAGAGATGA AATGATAAAC TCTAAACTAG CAGCAGATGA AGGAATAGAT
GCTAAAATAC TTTTCTTTGA TGAAGAGTCT GGAGTAAAGA TTGCAGAACT TATAGAGGGA
GCAGAAACTC TTAATCCTGC AACAGCTAAA AAGAAAGAAA ATATGGAATT AGTGGTAGGA
GCATTAAGAA CTTTACATAA TTCAGATATA AAAATGGAAA ATAGATTTAA TGTTTTTGAG
AAAATTGAGG AGTATGAGAG TCTTGTTAAA AAGGTTAACG GTACTCTTTT TGAAGATTAT
TATGAAATAA AAACAAGAGT ATTAAAGTTA GAAAAAGTTT TAGAAGATAA TGGAATGGAA
ATAAAACCAT GTCATAATGA TACCGTTCCA GAGAACTTTG TTAAAGATAT TAATGAAAGA
ATGTATCTAA TAGATTGGGA GTACAGTGGA TTAAATGATC CTATGTGGGA TTTAGCTGCT
CACTCAATTG AATGTGATTT TTCAGAGGAT GATGAAGAAT TATTCTTAAA TCTATATTTT
AACAATTTAA TTGAAGATAA GCATAAGATA AGAATTCTTG TCTATAAAAT ATGTCAGGAC
TTTTTATGGA GCATATGGAC TATTTTAAAA GAAGCTCAAG GTGATGATTT TGGAACTTAT
GGTATAGATA GATATAATAG AGGAAAGAAA AATTTAGAAT TATTAGATAA AATTTTAATG
GGGCAATAA
|
|---|
| Protein sequence | MLSYDIEVLK IINDEDNISQ RRLAEMLNLS LGKINSLLKE LLTKEYIVKI DIDKRNVKYE
LTEAGIALLE NSLDKVKSTK LSIHKHKFHK VKQAIILGAG GKGDFGKPAG FLELEEFRII
DRIIDILKSN GIEKIVIVNG YKKEYYEELA KKDSTIFCVT NSNYKWTGTM SSLALAKEYI
DDDFILVEND LVFESRAVEQ IIKNDNRDCV LITNESGSGD EAFVEIRDGY LFKMSKDVHQ
FNKIDGEMIG ISKISYKLFK MMLEEFKHNI NPYMNYEYTM LDVARNYKVG YEKINDLVWG
EIDNKDQYEK VKKHIIPMIR RKEMQYKIDQ VKSAIVNGLK VSEEEVKEIV PVGGMTNKNY
KAFVNDKAYI VRIPGLGTSS MINRRDEMIN SKLAADEGID AKILFFDEES GVKIAELIEG
AETLNPATAK KKENMELVVG ALRTLHNSDI KMENRFNVFE KIEEYESLVK KVNGTLFEDY
YEIKTRVLKL EKVLEDNGME IKPCHNDTVP ENFVKDINER MYLIDWEYSG LNDPMWDLAA
HSIECDFSED DEELFLNLYF NNLIEDKHKI RILVYKICQD FLWSIWTILK EAQGDDFGTY
GIDRYNRGKK NLELLDKILM GQ
|
|---|
| |