Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPR_0589 |
Symbol | |
ID | 4204455 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium perfringens SM101 |
Kingdom | Bacteria |
Replicon accession | NC_008262 |
Strand | + |
Start bp | 702289 |
End bp | 703089 |
Gene Length | 801 bp |
Protein Length | 266 aa |
Translation table | 11 |
GC content | 27% |
IMG OID | 642565149 |
Product | LicD family protein |
Protein accession | YP_697916 |
Protein GI | 110801529 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3475] LPS biosynthesis protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.0000965792 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGATTATA GAGAATGTTC ATTACAAGAA GCACAACTAA GAATGCTTGA AATGCTTTGT GAAATAGATA GAATATGCAA AAAATATGAT ATAAAATACT GGCTTGATGC AGGAACTTTA TTAGGAGCTA TAAGACATAA GGGGTTTATA CCATGGGATG ATGATATAGA TATAGGAATG ATTAGGGAAG ATTATAGAAA ATTTAAGTCA ATTGTTAAGG GGGAGTTAGA TCAAAATTAT TTTTGTCAAA GTCCTTTAAC AGATAGTTAT TCAGAATCAC CTTGGATAAA AATAAGAGAT AATAATAGTC GTATAGGAGA AGAAAAAAGA GAAAAAGGAC ATTCGGGTTT ATTTATAGAT ATATTACCTT ATGATGATTA TAATGATTAT AATAATGCTA AAAAGAAGCC AATATACAAT ATAATAAACT TAAAATGGAA AAGTGAATTA CCCTATAAGA AGGGGATTAA AAATATACCA AGAAATATAA GTTTATTTTC TTTAAAATTA ATATATAAAA TATCACCATA TAAAATGTTT ATAAAGAAAA CATTCTATAT GGCAGATAAA GCTAAAAATA TGAATAGTGA GTATATAGAT TATGGAATTG AAGGTCCTTG GAATATGAGA CTGAGAAAAT CAGATGTATT TCCATTAAAA TCAACAGAAT TTGCTGGATA TAAATTTATG ATTCCTAATA AACATGAAAA TGTATTAAGA TGTTTGTATG GTGAATGGAA TGTCTTACCT CCGAAAGAGA AACGTATACC TACACATTCT GAAAAAATTT ATATTAGATA G
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Protein sequence | MDYRECSLQE AQLRMLEMLC EIDRICKKYD IKYWLDAGTL LGAIRHKGFI PWDDDIDIGM IREDYRKFKS IVKGELDQNY FCQSPLTDSY SESPWIKIRD NNSRIGEEKR EKGHSGLFID ILPYDDYNDY NNAKKKPIYN IINLKWKSEL PYKKGIKNIP RNISLFSLKL IYKISPYKMF IKKTFYMADK AKNMNSEYID YGIEGPWNMR LRKSDVFPLK STEFAGYKFM IPNKHENVLR CLYGEWNVLP PKEKRIPTHS EKIYIR
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