Gene CPR_0532 details

Gene Information

• Locus tag: CPR_0532
• Symbol: ribA
• ID: 4206322
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Clostridium perfringens SM101
• Kingdom: Bacteria
• Replicon accession: NC_008262
• Strand: +
• Start bp: 631121
• End bp: 632320
• Gene Length: 1200 bp
• Protein Length: 399 aa
• Translation table: 11
• GC content: 33%
• IMG OID: 642565089
• Product: riboflavin biosynthesis protein RibA
• Protein accession: YP_697860
• Protein GI: 110803604
• COG category: [H] Coenzyme transport and metabolism
• COG ID: [COG0108] 3,4-dihydroxy-2-butanone 4-phosphate synthase; [COG0807] GTP cyclohydrolase II
• TIGRFAM ID: [TIGR00505] GTP cyclohydrolase II; [TIGR00506] 3,4-dihydroxy-2-butanone 4-phosphate synthase

Plasmid Coverage information

• Num covering plasmid clones: 17
• Plasmid unclonability p-value: 0.720092
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAGAAGT TTAATTTAGT AGAAGAGGCA ATAGAAGATA TAAAAAATGG GAAAATGGTT 
ATTGTTATTG ATGATGAGGG AAGAGAAAAT GAGGGGGATC TAGTTATGGC TGGAGAACTT 
GTTACTGGAG AAAAAATAAA TTTTATGGCC ACTTATGGAA AGGGTTTAAT ATGTGCTCCA 
GTAAGTGAGA GTATAGCTGA AAGTTTAGGG TTGAATCCTA TGGTTTCACA TAATACAGAT 
AATCATGAAA CTGCCTTTAC AGTATCTATA GATTATAAAA ATACAACTAC AGGAATATCA 
GCCTTTGAAA GGGCTCATAC AATTAAAGAA TTAATAAATG AAGAAAGCAA GGCAGAGGAT 
TTTAGAAGAC CAGGACATGT ATTTCCTTTA ATAGCTAAGA ATGGTGGCGT TTTAAAGAGA 
GCTGGGCATA CAGAGGCGGC AATTGACTTA GCAAAGTTAG CTGGATTAAA AGAAGTTGGG 
GTAATATGTG AAATAATGAA AGATGATGGA ACTATGGCTA GAACTGATGA ATTATTAGAA 
TTTGCAAAGA TTCATAATAT GAAAATAATA ACTATAGAAG ATCTAATTGC TTATAGAACA 
GAAAGAGATA ATTTTGTTTA TAGAGTTGTT GAAACTAATA TGCCAACTAA ATATGGAGAG 
TTCAAGGCTA TTGGGTTTAT AGATAAACTT ACAGGGGAGC ATCATGTAGC TTTAGTTAAA 
GGAGAGATAA AATCAGAGGA GCCAGTATTA TTAAGAGTAC ATTCAGAATG CTTAACTGGA 
GATGTTTTTG GATCAAGGAG ATGTGATTGT GGAGAGCAAT TTCATAGGGC TATGGAAAAA 
ATAAATGAAG AGGGAAAAGG AATATTACTT TATATGAGAC AAGAAGGAAG AGGAATAGGT 
CTTATAAATA AGTTGAAAGC TTATAAGCTT CAAGATGAAG GATTAGATAC CGTAGAAGCT 
AATATAGCCT TAGGATTTCC AGAAGATCTT AGAGATTATG GCGTTGGAGC ACAAATTTTA 
AAAGAGTTAG GCGTAAGGGA AATCAGGTTA ATGAGCAATA ACCCTAAAAA AATAACTGGC 
TTAGAGGGAT ATGGACTTAA AATAGTAGAA AGAGTACCTA TAGAAATAAA GTGTAATGAG 
GAAAATGAGT TTTATTTGAA AACTAAGAAA GAGAAAATGC ACCATTTAAT AATGCAGTAA 

 

Protein sequence

MKKFNLVEEA IEDIKNGKMV IVIDDEGREN EGDLVMAGEL VTGEKINFMA TYGKGLICAP 
VSESIAESLG LNPMVSHNTD NHETAFTVSI DYKNTTTGIS AFERAHTIKE LINEESKAED 
FRRPGHVFPL IAKNGGVLKR AGHTEAAIDL AKLAGLKEVG VICEIMKDDG TMARTDELLE 
FAKIHNMKII TIEDLIAYRT ERDNFVYRVV ETNMPTKYGE FKAIGFIDKL TGEHHVALVK 
GEIKSEEPVL LRVHSECLTG DVFGSRRCDC GEQFHRAMEK INEEGKGILL YMRQEGRGIG 
LINKLKAYKL QDEGLDTVEA NIALGFPEDL RDYGVGAQIL KELGVREIRL MSNNPKKITG 
LEGYGLKIVE RVPIEIKCNE ENEFYLKTKK EKMHHLIMQ