| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPR_0360 |
|---|
| Symbol | |
|---|
| ID | 4204045 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium perfringens SM101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008262 |
|---|
| Strand | + |
|---|
| Start bp | 438044 |
|---|
| End bp | 440602 |
|---|
| Gene Length | 2559 bp |
|---|
| Protein Length | 852 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 29% |
|---|
| IMG OID | 642564917 |
|---|
| Product | cell wall surface anchor family protein |
|---|
| Protein accession | YP_697689 |
|---|
| Protein GI | 110801452 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3408] Glycogen debranching enzyme |
|---|
| TIGRFAM ID | [TIGR01167] LPXTG-motif cell wall anchor domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.568384 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAATTTA ATTTAAAAAG AAAGGTTTTA ATTACAACAG CATTAACGAC AACCTTATTA
ACTGGGTTTT GTAATTTAAA TGCATATGGA AGCGTAAAAA ATACTTCTGT AAATGATTTC
AGAAATGTTT TAAACGTTCA AGGAAATCCA CAGGTAAACT TAAATGATTC CTATTCAACT
AATGTATCTA ATCCATTTTC GGATATGGGA GCATGGCATG CATATTATTT ACCTGAAAAA
GGAGCTACAA ATTTATACGG TGGATTTGCA GGGCCGTTAA TTGTAGGGGA AGAGTATCCA
ATTAACTTAT CAGATACTAT AAGCAAAATA ACTTTAACTA ATAATGATAC TGGAGAAGTA
TATGATTTAT CAAAAGCCAA AAATATAATG TTTGATTTTT ATCCAGGTAA ATTAGTTCAA
ACATATGAAT TAGATGATTT TAATTTGAAA TTAGAACTTA TTTTTGCAAC TAATAGAAGT
GCATTAATTA AAACAGAAAT TGAAAATAAA AAAAATACTG ATTTAAATTT AAATCTAGAG
TGGTCAGGAA ATATATTTAA TAAATCACCA TATACTATAA GTGTTAATGA AAATGGAGAA
AAAAATTACG ATTTAGGTCA GACATTAGAA GCAACCAAAA ATGGTGTACA AGTTAATTTT
TCTAACATAA GATCTACATG GTCATTTTTT TCTACAGATC AAACAAAGTT TAATGTTGAG
TATGATGGAA ATACTAGTAC ATCTATAAAT GGAAATACAT ATGTAACTAA GCTTGATAAC
GTTGTAAATA TTAAACCTGA AAATACATTT AAAACTTTTT CTACTCAAAG TTATACGTTT
ACAACAGAAG AGTTTAATAA TGAACAAGTT AAAATAAATG ATTTACTTGA AAATGGTGAT
ACATATTTTA ATGATAATAC TAATCGTTGG CAAAATTATT TAAATAAAGC TTTTTCAAAT
ACAGAAAAAG ATAGTGATCC ACATTATAAA GATGCTGCTG TAAAATCAAT AATTACTTTA
ACTACTAACT GGAGAAGCGC AGCAGGAGCT ATTAAACATG ATGGAATAGT ACCATCTTTA
TCATATAAAT GGTTTGTAGG AATGTGGGCT TGGGATTCAT GGAAACAAGC TGTTGCAACT
GCAAACTTTG ATGGAGAACT AGCTAAAAAT AATATTAGAG CTTTATTTGA CTATCAGATA
AAAGGTGATG ATTCAGTTAG ACCATATGAT AAAGGTACAA TAATAGATGC AATATTTTAT
AATAAGGATG AGCAAAGAGG AGGAGAAGGT GGAAACTGGA ATGAAAGAAA TTCTAAACCA
CCACTAGCAG CTTGGGCAGT ATGGAATGTT TATAAAGAAA CTAATGATAT AGAATTTTTA
AAAGAAATGT ATCCTAAATT AGTTGATTAC CATAATTGGT GGTATACAAA TAGGGATCAT
GATAAAAATG GAATAGCTGA GTATGGTGGT ATGGTGCATC CTGCTAATAA TAGTGAAGAT
GAAATAATAT TAGCAGCAGC ATGGGAGAGT GGTATGGATA ATGCTACTAG GTTTGATAAA
GAAGGATTTG GTTCAGATGA TGCTGGAGTT CATGTTTTTG AAAACAAAGA TAATAATGGA
AATACAGTAG GATACTCAAT AAACCAAGAA TCAGTTGATT TAAACTCTTA TTTATATGCA
GAAAAAGGAT TCTTAAAATC AATGGCTGAT ATTTTAGGAA AAACAGAAGA TTCTCAAAAA
TATGAAATAG AAGCTAAAAA TGTAGGAGCG TATATTAGAA ATAATATGTT TGATAAAGAA
ACTGATTTTT TCTATGATTT ACAAATAAAT GAGGATGGAA GTGAAAAAAA ATTATTAGTT
AATAGAGGAA AAGGAACTGA AGGTTGGATG CCACTTTGGG CTAAAGTTGC AACTCAAGAT
GAAGGTGAAT TAGTTAAAGA AAATATTATG GATCCTAGTA AATTTAATAC TTATATGCCT
TTACCTACAG CATCAAAAGA TAATCCTAAA TTTAATCCTA ATAAATATTG GCGTGGACCA
GTTTGGATGG ATCAAGCTTT ATATGGTATA GAATCACTTC AAAATTATGG TTTTAAGGAT
GAAGCTAAAA CTTTAACTAA AAAATTATTT GATAATGCAG AAGGATTAAT AGGAGATGGG
CCTATTAGGG AAAATTATAA CCCTGAAACA GGACAAGGCC TACATACTAA AAACTTTAGC
TGGTCAGCTT CAGCATATTA TTTATTATAT AAAAATGTAT TAACTTCTAA TAATACAACT
TGTCAAGAAA GTTTACCAAT TTTAGAAAGT GATAATATAA CTCCGCCAGA AGATGATTTT
CAAAAGCCAA CACCACCAGT AATCGAGGAG GAAAAACCAG AAACACCTCC TGCGAATGAT
TCTTCAGAAC AAGAAAAACC TGTTGTAAAG CCAGAAGAAA ACAATGATAA TATAAATTCA
TTACCTAATA CAGGAAATAT GTTTGGTAAT ACTTCTTTAT TGATTGGAGC CTTTAGTATG
CTTGGAGCGG GAATATATTT CTTAAAAAAA AGAAACTAA
|
|---|
| Protein sequence | MQFNLKRKVL ITTALTTTLL TGFCNLNAYG SVKNTSVNDF RNVLNVQGNP QVNLNDSYST
NVSNPFSDMG AWHAYYLPEK GATNLYGGFA GPLIVGEEYP INLSDTISKI TLTNNDTGEV
YDLSKAKNIM FDFYPGKLVQ TYELDDFNLK LELIFATNRS ALIKTEIENK KNTDLNLNLE
WSGNIFNKSP YTISVNENGE KNYDLGQTLE ATKNGVQVNF SNIRSTWSFF STDQTKFNVE
YDGNTSTSIN GNTYVTKLDN VVNIKPENTF KTFSTQSYTF TTEEFNNEQV KINDLLENGD
TYFNDNTNRW QNYLNKAFSN TEKDSDPHYK DAAVKSIITL TTNWRSAAGA IKHDGIVPSL
SYKWFVGMWA WDSWKQAVAT ANFDGELAKN NIRALFDYQI KGDDSVRPYD KGTIIDAIFY
NKDEQRGGEG GNWNERNSKP PLAAWAVWNV YKETNDIEFL KEMYPKLVDY HNWWYTNRDH
DKNGIAEYGG MVHPANNSED EIILAAAWES GMDNATRFDK EGFGSDDAGV HVFENKDNNG
NTVGYSINQE SVDLNSYLYA EKGFLKSMAD ILGKTEDSQK YEIEAKNVGA YIRNNMFDKE
TDFFYDLQIN EDGSEKKLLV NRGKGTEGWM PLWAKVATQD EGELVKENIM DPSKFNTYMP
LPTASKDNPK FNPNKYWRGP VWMDQALYGI ESLQNYGFKD EAKTLTKKLF DNAEGLIGDG
PIRENYNPET GQGLHTKNFS WSASAYYLLY KNVLTSNNTT CQESLPILES DNITPPEDDF
QKPTPPVIEE EKPETPPAND SSEQEKPVVK PEENNDNINS LPNTGNMFGN TSLLIGAFSM
LGAGIYFLKK RN
|
|---|
| |