| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPR_0145 |
|---|
| Symbol | |
|---|
| ID | 4206494 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium perfringens SM101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008262 |
|---|
| Strand | + |
|---|
| Start bp | 177913 |
|---|
| End bp | 179481 |
|---|
| Gene Length | 1569 bp |
|---|
| Protein Length | 522 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 30% |
|---|
| IMG OID | 642564700 |
|---|
| Product | putative surface protein |
|---|
| Protein accession | YP_697482 |
|---|
| Protein GI | 110803469 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG4932] Predicted outer membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.875356 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAATA ATATATTAAA AAAGTTTAGT TTTATGATGG TGTTTATTTT TGTTTTTATT
ACAACATCAA TACCTGTATT TGCGGCTACG CCATCAATTT CTAAAGATGC TCCTATAAAG
GGAAGTATCA CAATATCAAA AAAAGGTGCT ACATTTACTG CATATAAGTT ATTAGATGCA
ACTAAAAGTG GGGATGCATA TGAATACTCA GTAAATAGTG ATTTAAAAGA CTTCTTTAAT
AATTCTAATT ATGGTTCTTA TAGCCAAGAA TCAATTCAAA AATTAAGTGG AGAAGAAGTA
AAAGAGTTTG CTGTTAAATT ACATAAATAT GTTCTTGATA ATAAAAAGAG TGGAAAAGAA
CTTACAGATG GACAAAAAAA TACTGTTGAC TTAGGTTATT ACTTAGTTAC AGAAGCTTCA
AGTGATTCAG AGGGGGCAGC AGTTGCTTCA ACACCTATAA TAGTTTCAGT TCCTCAAGTT
TCAGGAGATT CATGGAATTA TGATGTAACT ATTAATCCAA AGGATAACAC TCCTATATTA
GAAAAAAACA TAGTTAAAGA GAATCAAAGA GTTAAAACTT CATCTGAGAA TATTGGAGAT
GTTGTTAAAT ACGAAGTAAA AGCTTCTATA CCAGTTTATC AAAAGAATGC ACAGGATATA
ATGTATAAAT TTACTGACAC TATGAGCAAG GGCTTAACAT ATGATGAGAA AACTGGCTTT
AAGGTGACTT CAGGAGATAA AGTTTTTGCT AAGGACAAGG ATTATACTGT AGAAGTTAAA
AAACAAGAAG ATGGAGAAAC AGTTATTACA ATAAACTTTG TATATGAGAA TATAAAAGCT
TATGCAGAGA CTGGAATAAC TTTAAATTAC CAAGCTACCT TAAATAAGGA TGTAGTTATT
AGTAATAAAG AAAACTTAGG AAATACTAAC AACATACAAT TAGACTATAC AAATAACCCA
CATGTTAAGG ATAGTTATAA GAAATTAACT GATAAGGTTA CTACTTATAC CTTTGGATTT
GGAATTACAA AGGTTGATTC AGAGCTTAAT TCTAAGCTTT TACAAGGTGC TGAGTTTTCA
GTAAAAGATG AAAGTGGAAA GACTGTAGCT AAATATACAT ATGATGAAAA AGGACAAGTG
GTTTCTTTAA GTGGAAATGG GGTAACTAAC TCAAAGGGAA TTACAACATT TGTAGGCTTA
AAAGAAGGAA AGTACCTTAT TACAGAGGAA GTAGCTCCAT CTGGATATAG CTTATTAAAA
AATCCAGTAG AAGTGACAAT TACAGCTAAT AAAGATGAGT CTGGAAAGTA CACAGGTGCT
GCAACTATAG AGATTTCTAA TGGAAATAAA GCAGGACAAA TAATAAATGA TATTTCAGAG
AATGATGGAA ATATATTATT TAATGTTCAA ATAGAAAACC ACGCTGGATT TTCTCTTCCA
TCAACAGGAG GATTAGGAAA TACAGGATTT ATAAAAATAG CTATTATCTT ATTAAGTATA
GTTTGTGTTT TATCTATACT AGGACTTGGC TACACTAAAT TTGAAAATAG CAGAAAAACT
AAGAACTAA
|
|---|
| Protein sequence | MKNNILKKFS FMMVFIFVFI TTSIPVFAAT PSISKDAPIK GSITISKKGA TFTAYKLLDA
TKSGDAYEYS VNSDLKDFFN NSNYGSYSQE SIQKLSGEEV KEFAVKLHKY VLDNKKSGKE
LTDGQKNTVD LGYYLVTEAS SDSEGAAVAS TPIIVSVPQV SGDSWNYDVT INPKDNTPIL
EKNIVKENQR VKTSSENIGD VVKYEVKASI PVYQKNAQDI MYKFTDTMSK GLTYDEKTGF
KVTSGDKVFA KDKDYTVEVK KQEDGETVIT INFVYENIKA YAETGITLNY QATLNKDVVI
SNKENLGNTN NIQLDYTNNP HVKDSYKKLT DKVTTYTFGF GITKVDSELN SKLLQGAEFS
VKDESGKTVA KYTYDEKGQV VSLSGNGVTN SKGITTFVGL KEGKYLITEE VAPSGYSLLK
NPVEVTITAN KDESGKYTGA ATIEISNGNK AGQIINDISE NDGNILFNVQ IENHAGFSLP
STGGLGNTGF IKIAIILLSI VCVLSILGLG YTKFENSRKT KN
|
|---|
| |