Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPR_0102 |
Symbol | ldh |
ID | 4206287 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium perfringens SM101 |
Kingdom | Bacteria |
Replicon accession | NC_008262 |
Strand | - |
Start bp | 130753 |
End bp | 131706 |
Gene Length | 954 bp |
Protein Length | 317 aa |
Translation table | 11 |
GC content | 33% |
IMG OID | 642564657 |
Product | L-lactate dehydrogenase |
Protein accession | YP_697439 |
Protein GI | 110803647 |
COG category | [C] Energy production and conversion |
COG ID | [COG0039] Malate/lactate dehydrogenases |
TIGRFAM ID | [TIGR01771] L-lactate dehydrogenase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.02476 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGATAAGAG AAAAAACTAA TAAAATCTCA ATAATAGGTG CAGGATTCGT TGGTTCAACA ACAGCCTTCG CATTAATGCA AGATGGATTA GCATCCGAAA TAGTAATTGT TGATATAAAT AAGGATAAGG CACATGCTGA AGCTATGGAC CTAGCACAAG GTGCGGCATT TGTGAAATCT GTTGATATAA AATCAGGAGA CTATGCAGAT ACAAAAGACT CTGACATAGT TATAATAACT GCTGGAGTTG GTCCAAAGCC AGGTGAAACA AGATTAGATA TTATAAATAA AAACTTAAAA ATCTTCAAAA GTATAGTACC TGAGGTTGTT AAATATAGCC CAAACTCAAT ACTTTTAGTA GTATCAAACC CAGTTGATAT TTTAACTTAT ATAACTTACA AGCTTTCTGG ATTCCCTAAA GAACGTGTTG TTGGATCTGG AACTGTCTTA GATACTTCAA GATTAAAATA TATGCTTTCA GAACATTTTG ATATAGATGC TAGAAATGTT CACACATATA TAATTGGAGA ACATGGTGAT TCAGAAATAA CAGCTTGGAG CTTAACTAAT ATTGCTGGTG CAAATGTTGA TGAGTATTGT AAAACAGTTT GCGCTAACTG TGATGGCTCC TTTAAAAAGG AACTTCCTGA AAAAGTTAAA AATGCAGCTT ATGAAATAAT AAATAGCAAA GGATATACAA ACTATGCTGT AGCTCTTGCC GTTACAAGAA TAGTTGAAGC AATCCTTCGT GATGAAAATG CTATTTTAAC TGTTTCTTCT CTATTTGAAG GCCAATACGG AATTGATAAT GTTTATTTGG CAATGCCTAC TATAGTTGAT AGAAGTGGAG CTAGACAAAT TCTAGATGTC CCTATATCAA ATGAAGAAAA AGAAAACCTA ATAAAATCAG CCGAAATTTT AAAAGGTCAT ATAGCTAATT CCGAATTAGA TTAG
|
Protein sequence | MIREKTNKIS IIGAGFVGST TAFALMQDGL ASEIVIVDIN KDKAHAEAMD LAQGAAFVKS VDIKSGDYAD TKDSDIVIIT AGVGPKPGET RLDIINKNLK IFKSIVPEVV KYSPNSILLV VSNPVDILTY ITYKLSGFPK ERVVGSGTVL DTSRLKYMLS EHFDIDARNV HTYIIGEHGD SEITAWSLTN IAGANVDEYC KTVCANCDGS FKKELPEKVK NAAYEIINSK GYTNYAVALA VTRIVEAILR DENAILTVSS LFEGQYGIDN VYLAMPTIVD RSGARQILDV PISNEEKENL IKSAEILKGH IANSELD
|
| |