Gene CPR_0087 details

Gene Information

• Locus tag: CPR_0087
• Symbol: glgD
• ID: 4206157
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Clostridium perfringens SM101
• Kingdom: Bacteria
• Replicon accession: NC_008262
• Strand: +
• Start bp: 103595
• End bp: 104701
• Gene Length: 1107 bp
• Protein Length: 368 aa
• Translation table: 11
• GC content: 26%
• IMG OID: 642564636
• Product: glucose-1-phosphate adenylyltransferase, GlgD subunit
• Protein accession: YP_697426
• Protein GI: 110803751
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG0448] ADP-glucose pyrophosphorylase
• TIGRFAM ID: [TIGR02092] glucose-1-phosphate adenylyltransferase, GlgD subunit

Plasmid Coverage information

• Num covering plasmid clones: 29
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAATAATT GCATAGGTAT AATAAATTTA GATGAGAATG AAAGCAAAAT TGGAGAATTA 
GTAAAAAATA GGCCTTTAGC AGCAGTACCT ATAGCAGGAA GATATAGAAT AATTGATTTT 
ATACTTTCTA ATATGACCAA TGCAGGAATA GAATCTTTAG GCATTTTAAG TAAAAATAAA 
TCGCGTTCAT TAGTAGATCA TTTAACTAAT GGTAGACCAT GGGATTTGCA CAGAAAAAGA 
GATGGGTTAA GAGTATTTAA TTTTGGAGAA AGAGATCCAT ATTATGATGA TATAACTAAT 
CTTTATGAAA ATTTAGAGTT TTTAACTAAA AGTAGAAGAG AATACGTTAT TATGTCACCT 
TCATATATGA TTTGTAATAT AGATTTAAAA GAAGCTTTAG AATATCATAA GAAAAATGAT 
AATGATATTA CAGTAATATA TAAAAAAGTT AAAGATGCAG ATTCTAATTT TATTGATTGT 
GATGTTTTAA ATTTTGATGA ATGTGGATTT ATAAAAAGTA TAGGAAAAAA TTTGGGTAGA 
GAAGAAGAAA GTAGCATAAG TTTAGAAATG TATATATTAA GAACAGATCT TCTAATAGAA 
ATAATATATG AATGTATAAG AAGAGGTTCT CATAGAAAAT TTAAAAGTTA TTTAAAGGAA 
TTCTTAGATG AAATTAAGGT TGGTGGATTT GAATTTAAAG GTTATTTAAG TTGTGTTAAT 
TCACTAAAAT CTTATTACAA GGCTAATATG GATTTATTAG AAGAGAAGGT TTATAAGGAA 
TTATTTATAG ATAATAATCC TATATATACT AAATCTAGAG ATGAAGGACC GACACATTAT 
ACTAAAAATA GTGAAGTAAC TAATTCGATA ATAGCAAATG GTTCTTATAT TGAAGGGAAA 
GTTGAAAACA GTATAATTGG AAGAAGAGTT TATGTAGGAC CAGAGGCAGT TATTAAAAAT 
TGTATTATAA TGCAAGAAAC TGTTATAGGT GAAAATGCCC ATTTAGATAA AATAATAACA 
GATAAGGCAG CGGTAATAAG AGATGATGAT AAAATAGTAG GTCTTGAATA CTGTCCTATG 
GTTTTAAGCA AACCTAATGT AATATAA 

 

Protein sequence

MNNCIGIINL DENESKIGEL VKNRPLAAVP IAGRYRIIDF ILSNMTNAGI ESLGILSKNK 
SRSLVDHLTN GRPWDLHRKR DGLRVFNFGE RDPYYDDITN LYENLEFLTK SRREYVIMSP 
SYMICNIDLK EALEYHKKND NDITVIYKKV KDADSNFIDC DVLNFDECGF IKSIGKNLGR 
EEESSISLEM YILRTDLLIE IIYECIRRGS HRKFKSYLKE FLDEIKVGGF EFKGYLSCVN 
SLKSYYKANM DLLEEKVYKE LFIDNNPIYT KSRDEGPTHY TKNSEVTNSI IANGSYIEGK 
VENSIIGRRV YVGPEAVIKN CIIMQETVIG ENAHLDKIIT DKAAVIRDDD KIVGLEYCPM 
VLSKPNVI