Gene CPR_0081 details

Gene Information

• Locus tag: CPR_0081
• Symbol: glgB
• ID: 4204755
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Clostridium perfringens SM101
• Kingdom: Bacteria
• Replicon accession: NC_008262
• Strand: +
• Start bp: 93524
• End bp: 95548
• Gene Length: 2025 bp
• Protein Length: 674 aa
• Translation table: 11
• GC content: 29%
• IMG OID: 642564630
• Product: glycogen branching enzyme
• Protein accession: YP_697420
• Protein GI: 110802271
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG0296] 1,4-alpha-glucan branching enzyme
• TIGRFAM ID: [TIGR01515] alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase

Plasmid Coverage information

• Num covering plasmid clones: 25
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACTTTAG TAGAAGTAAA AGATGATAAA TTAGAGATAA AACCTGTTAG ATTGAGAAAA 
GAAAAATATA AAGCACAATT AGAAAATAAA ATTTTTAATG AAGATGAGTT ATATTTATTT 
CATGAAGGGC GAAATTATAA TGCTTATAAT TTTATGGGAG CTCATTTTAC TAGTGAAAAT 
AGAAAACGAG GGGTAAGATT TACCCTTTGG GCTCCAAGGG CAAAGAATAT TTTTTTAGTT 
GGAGATTTTT CAAATTGGGA GACAAAAGAA GAAAATAAAC TTAATAGAAT AAATGAAACA 
GGGCTTTGGA GTATTTTTAT ACCTAGATTA AAAGAGGGAA TTAAGTATAA GTATTATATT 
GAACAAGAAG ATGGAAAAGC AGTATTAAAG GCTGATCCTT ATGGAATTTA TTCAGAGGTA 
AGACCTAATA CTGCTTCTAT TTTATGCGAA AAAACTAAAA TAAGATGGTC AGATAAAAAG 
TGGTTAAATA AAAGAGAAGC AACTAATTAT TTTGAAAGTC CTATTAATAT ATATGAATTA 
CACTTAGGCT CATGGAAAAG AAAAGATGAG GATGAGTTTT TATCTTATGA TGAATTAAGT 
GTGGTTTTAC CTAAGTATGT TAAGGAAATG GGATATACTC ATGTTGAATT TATGCCATTA 
AATGAGCATC CATTAGATGC CTCTTGGGGG TATCAGGTTA CAGGATATTA TTCAGTAACA 
AGTAGATATG GAGATATTAA GGGATTAAAA AGGTTAATAA ATGCCCTTCA TAAAAATGAT 
ATAGGAGTTA TTTTAGATTG GGTACCAGGT CATTTTTGTA AGGATGAACA AGGATTATAT 
ATGTTTGATG GTACACCAAC TTATGAATAT GAGGAAAAGT GGAAAGCTGA TAATAAAGGA 
TGGGGAACTT TTAATTTTGA TTTGGGAAAA CCAGAAGTAA AAAGCTTTTT AATTTCTAAT 
GCTTTTTACT TTATAAATGA ATTTCATATA GATGGATTAA GGGTTGATGC TGTTTCTAAT 
ATGCTTTACT TAAATTATGG AAGAAATCAT GGAGAATGGA TTCCTAATAT ATATGGAGGA 
AATGAAAATT TAGAAGCTAT TCAATTTATA AAAGAGCTTA ATGAGGCTAT AAAAACTTAT 
AGCAAAGGGG TAATTACAAT TGCAGAAGAA TCAACATCTT GGCCTAATGT GACTAATGAT 
ACTGAATATG GCGGCTTAGG ATTTGATTTT AAATGGAATA TGGGTTGGAT GAATGACACT 
TTAGAATATA ATGAGTTAGA TCCTATATAT AGAAAGTATC ATCATAATAA ATTAACTTTC 
CCTATGATGT ACAATCATTC AGAGAAATTT ATATTACCTA TATCTCATGA TGAAGTTGTT 
CATGGGAAAA AATCTCTTAT AGATAAAATG CAGGGAGATT ATTGGAATAA GTTTTCTAAT 
TTGAGAGCGT ATATGGCATA TATGTATGGT CATCCAGGGA AAAAACTTAT GTTTATGGGA 
TGCGAATTTG GACAGTTCAT AGAGTGGAGA GAATATGAAG AGCTTGAGTG GAAGTTAATT 
GATAAGTTTG ATATGCATAG AAAAACTCAT AATTTCTTTA AGGATTTAAA TAACTTTTAT 
AAAAATAATT CTGAGCTTTG GGAATTAGAT TATGATGGAG ATGGATTTCA ATGGATTGAT 
GCTGATAATA ATGAACAAAG CATATATATT TTTATAAGAA AAAGTAAAAA TATAGAAAAG 
TATAAAATAT TTGTATGCAA TTTTACTCCA ATGGTTTATT ATGATTTTAA TATAGGAGTT 
CCTGAAAAGG GAGTTTATAG AGAAATTTTC AATACAGATA AGAAAGAATA TGGTGGTTCT 
GGACAAGTTA TTAAAGGGAA TTTATTCTCA AGAAAAGGTT GGTGCCATAA TCAGCCATAT 
ACTTTAACCA TAAAGGTTCC GCCAATGGCA GTTTCTGTTT TTGAAAGAAT AATTGAAGAA 
AATAAAACAG AAGAAAAGAT AGTAAAAGAA GATAAATATA TTTAA 

 

Protein sequence

MTLVEVKDDK LEIKPVRLRK EKYKAQLENK IFNEDELYLF HEGRNYNAYN FMGAHFTSEN 
RKRGVRFTLW APRAKNIFLV GDFSNWETKE ENKLNRINET GLWSIFIPRL KEGIKYKYYI 
EQEDGKAVLK ADPYGIYSEV RPNTASILCE KTKIRWSDKK WLNKREATNY FESPINIYEL 
HLGSWKRKDE DEFLSYDELS VVLPKYVKEM GYTHVEFMPL NEHPLDASWG YQVTGYYSVT 
SRYGDIKGLK RLINALHKND IGVILDWVPG HFCKDEQGLY MFDGTPTYEY EEKWKADNKG 
WGTFNFDLGK PEVKSFLISN AFYFINEFHI DGLRVDAVSN MLYLNYGRNH GEWIPNIYGG 
NENLEAIQFI KELNEAIKTY SKGVITIAEE STSWPNVTND TEYGGLGFDF KWNMGWMNDT 
LEYNELDPIY RKYHHNKLTF PMMYNHSEKF ILPISHDEVV HGKKSLIDKM QGDYWNKFSN 
LRAYMAYMYG HPGKKLMFMG CEFGQFIEWR EYEELEWKLI DKFDMHRKTH NFFKDLNNFY 
KNNSELWELD YDGDGFQWID ADNNEQSIYI FIRKSKNIEK YKIFVCNFTP MVYYDFNIGV 
PEKGVYREIF NTDKKEYGGS GQVIKGNLFS RKGWCHNQPY TLTIKVPPMA VSVFERIIEE 
NKTEEKIVKE DKYI