| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPR_0026 |
|---|
| Symbol | |
|---|
| ID | 4205554 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium perfringens SM101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008262 |
|---|
| Strand | - |
|---|
| Start bp | 33505 |
|---|
| End bp | 34773 |
|---|
| Gene Length | 1269 bp |
|---|
| Protein Length | 422 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 26% |
|---|
| IMG OID | 642564569 |
|---|
| Product | polyA polymerase family protein |
|---|
| Protein accession | YP_697371 |
|---|
| Protein GI | 110802983 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0617] tRNA nucleotidyltransferase/poly(A) polymerase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAATTAC CTAACAATGT ACAATATATC TTAGAGAAAT TTGACTCTAA TGGTTTTGAA
GCCTTTATAG TTGGTGGTTG TGTAAGAGAT TCTTTATTAA ATAAAAAACC TCAAGATTAT
GATATTACAA CCAATGCATT CCCTGAAAAA ATAGAAGAGC TTTTTGATAA AACTATCCCT
ACTGGTATTA AACATGGAAC AGTAACAGTT TTAATCGACA AAACTCCTTA TGAAGTAACT
ACTTATAGGG TAGATGGGGA ATATTTAAAT AATAGAAAGC CTAAAGACGT AAAGTTCGTT
TCTAATATAG AAGAAGATTT ATCAAGAAGA GATTTTACTA TAAATGCAAT GGCATATAGC
CCATATTTAG GATTTAAGGA TTGTTTTAAT GGAAAAGAGG ATCTAAAAAA CAAATTAATA
AGATGCGTTG GAGATCCTGA TAAACGCTTC TCTGAAGATG CCTTAAGAAT GCTTAGAGCA
ATTAGATTTA GTTGTCAATT AAACTTTAAA ATAGAAAAAT TAACTGCTGA ATCTATAAGA
AAGAATTTTA AATTAATAAA AAATATAAGC ATGGAAAGAA TTCAAAGTGA ATTTACTAAA
ATCATTCTAA GCAATGAGCC TGATAGAGGT CTTATGCTTC TTAGAAAGCT AGGATTTTCT
GACTTTTTAG TTAAGGAATT TAAGAATTTA AAACTAATAA ATTGCTATGA TTTATATGAT
GATATTCATG ATACTTATGG ATTAATAAAT TCACTTCCTA AAAAGCTTCA TGTAAGATTA
GCAGGATTAT TCTATAAGGT TTTTAATTCT GAAAATGCAG TTGAGAAGTG CAGAACTATA
TTAAAGAAAC TTAAATATGA TAATAATACA ATCAACGATA CTTGCAACTT AGTAGAAAAT
ATAAATAGTA TTTCATGTAA TATGACAAGA AAAAAACTAA AACTACTTAT AAATTCAGTT
GGAACCGAAA ATATCTTTGA TTTATTAGAT TTACAAAAAT CATATTTATC TTATATGGAT
GAATATGATA CTGAGTGTAT AGATATATTA AAAAATAGAG TTTCTGATAT ATTAGCTTCA
AAAGAACCCA TATTTATTAA GGACTTAGCC ATAACAGGAA ATGACTTAAT TACCGAACTT
AATTTTAAAC CTGGAAAAAA TATAGGTGTT ATATTAAATT TTCTTCTTGA AAATGTAATG
CAAACACCAG AGTTAAACAA TAAGGAAGAC TTACTAAACC TTAGTAAGCA ATTTTATTCA
TATAATTAA
|
|---|
| Protein sequence | MKLPNNVQYI LEKFDSNGFE AFIVGGCVRD SLLNKKPQDY DITTNAFPEK IEELFDKTIP
TGIKHGTVTV LIDKTPYEVT TYRVDGEYLN NRKPKDVKFV SNIEEDLSRR DFTINAMAYS
PYLGFKDCFN GKEDLKNKLI RCVGDPDKRF SEDALRMLRA IRFSCQLNFK IEKLTAESIR
KNFKLIKNIS MERIQSEFTK IILSNEPDRG LMLLRKLGFS DFLVKEFKNL KLINCYDLYD
DIHDTYGLIN SLPKKLHVRL AGLFYKVFNS ENAVEKCRTI LKKLKYDNNT INDTCNLVEN
INSISCNMTR KKLKLLINSV GTENIFDLLD LQKSYLSYMD EYDTECIDIL KNRVSDILAS
KEPIFIKDLA ITGNDLITEL NFKPGKNIGV ILNFLLENVM QTPELNNKED LLNLSKQFYS
YN
|
|---|
| |