Gene CPR_0006 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCPR_0006 
SymbolgyrB 
ID4206216 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameClostridium perfringens SM101 
KingdomBacteria 
Replicon accessionNC_008262 
Strand
Start bp4987 
End bp6903 
Gene Length1917 bp 
Protein Length638 aa 
Translation table11 
GC content33% 
IMG OID642564546 
ProductDNA gyrase subunit B 
Protein accessionYP_697357 
Protein GI110803693 
COG category[L] Replication, recombination and repair 
COG ID[COG0187] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit 
TIGRFAM ID[TIGR01059] DNA gyrase, B subunit 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTGGAGC AAAACAATCA AAATTATGAT GCAAGTCAGA TTCAAGTCTT AGAGGGACTA 
GAAGCTGTAA GAAAAAGACC AGGAATGTAT ATTGGTAGTA CTAGTTCAAG AGGTCTTCAT
CATTTAGTTT ACGAAATTGT TGATAACAGT ATTGATGAAG CATTAGCTGG ATACTGTAAA
AATATAAAAG TATACATACA CAAGGATAAT TCAATTACTG TAGTTGATGA CGGAAGAGGT
ATGCCAGTAG GAATTCATCC AAAGATGGGA AAACCAACAG TAGAAGTTAT AATGACAGTT
CTACATGCTG GAGGTAAATT CGGAGGAGGC GGATACAAAG TATCTGGTGG ATTACATGGT
GTTGGTGCAT CTGTAGTTAA TGCTCTTTCA GAATTATGCG AAGTAATTGT AACAAGAGAT
GGATATGTTT GGAAACAGTC TTATAAAAGA GGGGCTGTAC TTACAGGTTT AGAGAAAATA
GGAGAAGCTG AAGGTAGTGG AACTAAAGTT CACTTTAAGC CTGACCATGA AATATTCGAA
GAAACTGAAT ATGATTTTGA AATTTTATCA CAAAGACTTA GAGAATTAGC TTTCTTAAAT
AAGGGAATAA ACATAACTCT TATTGATGAA AGAGAAGATG AAGTTAAAGA AGAAGTATAT
CACTATGAAG GTGGTATAAA ATCTTTTGTA AGTTATCTAA ATAGAAATAA AGAGGTTTTA
CATGATGAAC CAATTTATGT AGAAGGTCTT AAAGATGGAA TTGCTGTAGA GGTTTCTTTA
CAATACCATG ATGGTTTCAA TGAAAATATC TTTACTTTTG CTAATAATAT AGACACTGTT
GAAGGTGGTA CTCACTTAGC AGGATTTAAA ACTGCTTTAA CAAGAGTAAT GAATGATTAT
GGTAGAAGAT TTGGTCACTT AAAGGAATCA GATAAGAACT TATCAGGAGA TGACATAAGA
GAAGGTTTAA CTGCTGTTGT TTCTGTTAAA ATATCTGAGC CTCAATTTGA AGGTCAAACT
AAAACTAAAT TAGGAAATAG TGAAGTTAGA AGTGCTGTTG ATTCAATTTC AGGAGAAGGA
ATTTCTACTT TCTTAGAAGA AAATCCTGAG GTTGGTAAAA TTATAATAGA AAAAGCTTTA
TTAGCATCAA GAGCTAGAGA AGCTGCAAGA AGAGCTAGAG AACTTACAAG AAAATCAGTA
CTTGAAAGAA GTTCATTACC AGGTAAGCTT GCTGATTGTT CATCAAAAGA TCCAAAGGAA
TGTGAAATTT ACATAGTTGA GGGAGACTCA GCTGGTGGAT CTGCAAAGCA AGGAAGAGAC
AGAAAATTCC AAGCTATATT ACCTTTAAGA GGTAAAATAA TGAACGTAGA AAAGCAAAGA
TTGGATAAAA TCTTAGGTTC AGATACTATA AGATCAATGG TAACTGCAAT TGGAGCTGGT
ATAGGACCTG AGTTTGATAT AGAAAAAATA AGATATAATA GAATAATAAT CATGACTGAT
GCTGACGTTG ATGGTGCTCA CATAAGAACT CTATTATTAA CATTCTTCTA TAGATATATG
AGAGACTTAG TTGAGCAAGG ACACGTTTAT ATAGCGCAAC CACCACTATA TAAAATTTCT
AAAGGAAAAC AAGAGAGATA TGCATACTCA GATGCTGCTG CAGATGAAAT AATAGAAGAG
TTTGGTGGAA AGGATAGTAG TGTAAATGTT CAAAGATACA AAGGTCTTGG AGAAATGAAC
GCAGGACAAC TTTGGGAAAC TACTATGGAT CCAGAATCAA GAATATTATT AAGAGCAGAT
ATTGAGGATG CTATGGTAGC TGATGAGATA TTTACAATTC TTATGGGCGA TAAAGTAGAG
CCAAGAAGAG AATTTATTCA GAAGAATGCT AAAAATGTTA GCAATTTAGA TATATAG
 
Protein sequence
MLEQNNQNYD ASQIQVLEGL EAVRKRPGMY IGSTSSRGLH HLVYEIVDNS IDEALAGYCK 
NIKVYIHKDN SITVVDDGRG MPVGIHPKMG KPTVEVIMTV LHAGGKFGGG GYKVSGGLHG
VGASVVNALS ELCEVIVTRD GYVWKQSYKR GAVLTGLEKI GEAEGSGTKV HFKPDHEIFE
ETEYDFEILS QRLRELAFLN KGINITLIDE REDEVKEEVY HYEGGIKSFV SYLNRNKEVL
HDEPIYVEGL KDGIAVEVSL QYHDGFNENI FTFANNIDTV EGGTHLAGFK TALTRVMNDY
GRRFGHLKES DKNLSGDDIR EGLTAVVSVK ISEPQFEGQT KTKLGNSEVR SAVDSISGEG
ISTFLEENPE VGKIIIEKAL LASRAREAAR RARELTRKSV LERSSLPGKL ADCSSKDPKE
CEIYIVEGDS AGGSAKQGRD RKFQAILPLR GKIMNVEKQR LDKILGSDTI RSMVTAIGAG
IGPEFDIEKI RYNRIIIMTD ADVDGAHIRT LLLTFFYRYM RDLVEQGHVY IAQPPLYKIS
KGKQERYAYS DAAADEIIEE FGGKDSSVNV QRYKGLGEMN AGQLWETTMD PESRILLRAD
IEDAMVADEI FTILMGDKVE PRREFIQKNA KNVSNLDI