| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPR_0001 |
|---|
| Symbol | dnaA |
|---|
| ID | 4204258 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium perfringens SM101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008262 |
|---|
| Strand | + |
|---|
| Start bp | 236 |
|---|
| End bp | 1609 |
|---|
| Gene Length | 1374 bp |
|---|
| Protein Length | 457 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 30% |
|---|
| IMG OID | 642564541 |
|---|
| Product | chromosomal replication initiation protein |
|---|
| Protein accession | YP_697352 |
|---|
| Protein GI | 110803386 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0593] ATPase involved in DNA replication initiation |
|---|
| TIGRFAM ID | [TIGR00362] chromosomal replication initiator protein DnaA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.00000597417 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATGCCC AACTAAATAA TCTCTGGGAA CAAGCATTGA ACATAATAAA AGGAGAAATT
TCTGAAATAA GCTTTAACAC TTGGATTAAA AGCTGCACTC CTATATCAAT TTCAGATAAC
ATATTAAAAC TTTCTGTTCC TAATGAATTC ACTAAAGGGA TTCTAGATAC AAGATATAAA
GACTTATTAA TTCAAGCTTT AAAGATAGTT ACATCTAGAA AGTTTAAAAT AGAATTCTAT
CTTGAATCTG ATTTAGAAGA AGAAAAAGAA AATGAGGAAA AGCAGAAAGA AGAGAAGAAA
GATAATACAA ATGATGTCGA TGGATCTATA GTTGTAAGTG ATGAAATGTC AGCTACATTA
AATCCTAAAT ATACTTTCCA ATCCTTTGTA ATAGGTAATA GTAACCGCTT TGCTCATGCA
GCATCTTTAG CAGTTGCAGA ATCGCCAGCA AAAGCTTATA ACCCATTATT TATCTATGGT
GGAGTAGGAC TTGGAAAAAC TCATTTAATG CATGCAATAG GACATTATAT TCTTCAAGAA
AATCCTAAAG CAAAAGTAGT TTATGTATCA TCTGAAAAAT TCACTAATGA ACTTATTAAT
GCTATTAAAG ATGATAAGAA TGAAGAGTTT AGAAACAAAT ATAGAAAAGT CGATGTTTTA
TTAATAGATG ATATTCAATT CATAGCAGGT AAAGAACGTA CTCAAGAAGA GTTCTTCCAT
ACCTTTAATG CTCTACATGA AGAGAATAAA CAAATTATAC TATCATCAGA TAGACCACCT
AAGGAAATTC CTACATTAGA AGACAGATTA AGATCTAGAT TTGAATGGGG TTTAATAGCA
GATATTCAAC CACCTGATTT CGAAACTAGA ATGGCAATAC TAAAGAAAAA AGCTGATGTT
GAAGGTTTAA GTGTACCAAA TGAAGTTATG GTATATATAG CTACTAAAAT TAAATCTAAT
ATAAGAGAAT TAGAAGGTGC GCTTATAAGA ATAATAGCTT ATTCCTCTCT AACTAACAGG
GATGTAAGCG TTGATTTAGC TTCAGAAGCA CTTAAAGATA TAATATCTAA TAAAGAAAGT
GCTCCAGTTA CAGTAAAAAC TATTCAAGAA TCCGTAGCAA ATTATTATAA TTTAAGAATA
GAGGATTTAA AATCTCAAAG AAGAACTAGA AATATAGCTT ATCCTCGTCA AATTGCTATG
TATTTAAGTA GAAAACTTAC AGATATGTCT TTACCTAAAA TAGGTGAAGA ATTTGGTGGA
AGAGATCATA CTACAGTAAT TCATGCTTAT GAAAAAATTT CTGAAAATTT AAAGACTGAT
GAAGGTCTAC AAAGCATGAT TAATGACATT ACTAAAAAGC TTACTCAAAA GTAA
|
|---|
| Protein sequence | MDAQLNNLWE QALNIIKGEI SEISFNTWIK SCTPISISDN ILKLSVPNEF TKGILDTRYK
DLLIQALKIV TSRKFKIEFY LESDLEEEKE NEEKQKEEKK DNTNDVDGSI VVSDEMSATL
NPKYTFQSFV IGNSNRFAHA ASLAVAESPA KAYNPLFIYG GVGLGKTHLM HAIGHYILQE
NPKAKVVYVS SEKFTNELIN AIKDDKNEEF RNKYRKVDVL LIDDIQFIAG KERTQEEFFH
TFNALHEENK QIILSSDRPP KEIPTLEDRL RSRFEWGLIA DIQPPDFETR MAILKKKADV
EGLSVPNEVM VYIATKIKSN IRELEGALIR IIAYSSLTNR DVSVDLASEA LKDIISNKES
APVTVKTIQE SVANYYNLRI EDLKSQRRTR NIAYPRQIAM YLSRKLTDMS LPKIGEEFGG
RDHTTVIHAY EKISENLKTD EGLQSMINDI TKKLTQK
|
|---|
| |