| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPF_2992 |
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| Symbol | trmE |
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| ID | 4203662 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium perfringens ATCC 13124 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008261 |
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| Strand | - |
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| Start bp | 3252177 |
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| End bp | 3253553 |
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| Gene Length | 1377 bp |
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| Protein Length | 458 aa |
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| Translation table | 11 |
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| GC content | 30% |
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| IMG OID | 638083859 |
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| Product | tRNA modification GTPase TrmE |
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| Protein accession | YP_697346 |
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| Protein GI | 110799764 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0486] Predicted GTPase |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00450] tRNA modification GTPase TrmE |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAAAGAAT TCGATACTAT TGCTGCTATA GCTACAGCAT TAGGAGAAGG TGGAATAGCT
ATAATTAGAG TATCAGGAAA TAAAGCTCTT GAGATTGTAA ATAAAATATT CAGAGGAATA
AACGGAAAAG ATTTATTAGA TATAAAACCA TATACTATGA GATATGGTCA TATGATAGAT
GAAAATAATG AGATTATAGA TGAAGTTATA GTTAGTTTTA TGAAAGGTCC TAGAAGCTTT
ACAGCTGAGG ATACAGTAGA AATAAACTGT CATGGTGGTA TTGTAGCTAC TAATAAAGTT
CTACAAAATG TAATAAAAGC TGGTGCAAGA CTTGCTGAGC CAGGTGAATT TACAAAAAGA
GCTTTTTTAA ATGGAAGAAT AGATTTAAGC CAAGCAGAAG CAGTTATGGA TATAATAACT
GCTAAGACTG AACTTTCAAT GAAATCAGCT ATGACTCAAA GTCAAGGAAG ACTTTCTACT
GAGATAAACA ATCTTAGAAA AGAGGCTTTA GATATATTAG CTCTAATTGA ATATGCTGTT
GACTTTACAG AGGATGACGA AGAACCAGAT GAAACTATAC CAGTTAAGGT AAAAGAGGAT
GTTATAACTC TTAGAGGTAA AGTAAATAAT TTAATTGATA CTGCTGATGA AGGTAAACTT
ATTAGAGATG GTTTAAGCAT GGTTATAGTA GGAAAACCTA ACGTAGGAAA ATCATCACTT
TTAAATGCTC TATTAAATGA AAAGAGAGCT ATTGTAACTG ATATAGCAGG AACAACAAGG
GACGTAATAG AAGAATATAT AAATTTAGAT GGAATACCTG TTAGACTAGT AGATACAGCG
GGAATCAGAG AAACTGAAGA TGTTGTAGAG AAAATAGGTG TAGAAAAATC TAAAGAAAAA
ATCAATGAAG CTGATTTAGT TATACTAATG TTAGATACAA GTAGAGAATT AGATGAGGAA
GACAAGGAAA TTATTGATTA CATTAAAGAT AGAAAATACA TAGTACTTTT AAATAAGGTT
GATTTAGATA GAAAGTTATC CTCAGAAATT GTGGATAACT TAGAAAATAA AATAGAACTA
TCTGCAAAAA CTGGTTTTGG TATAGATGAT TTAAAATCAA AGATAAAAGA TTTATTCTTT
AATGGATCAA TTGATGCTGA AAGTGTAATG GTAACTAATA CTAGACATAA AGAGGCTTTA
TATAGAGCTT CTGAAAACTT AGATGGTGCA TTAAATGGAC TTAATAATAA TGAGTTTTTA
GATCTAGTAT CAATTTATGT TACATCTGCT TTAAGAGCCT TAGGGGAAAT CACTGGAGCA
GAGTTAGAGG AAGACTTAGT AAACAAAATA TTTGCAGAAT TTTGTTGTGG AAAATAG
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| Protein sequence | MKEFDTIAAI ATALGEGGIA IIRVSGNKAL EIVNKIFRGI NGKDLLDIKP YTMRYGHMID
ENNEIIDEVI VSFMKGPRSF TAEDTVEINC HGGIVATNKV LQNVIKAGAR LAEPGEFTKR
AFLNGRIDLS QAEAVMDIIT AKTELSMKSA MTQSQGRLST EINNLRKEAL DILALIEYAV
DFTEDDEEPD ETIPVKVKED VITLRGKVNN LIDTADEGKL IRDGLSMVIV GKPNVGKSSL
LNALLNEKRA IVTDIAGTTR DVIEEYINLD GIPVRLVDTA GIRETEDVVE KIGVEKSKEK
INEADLVILM LDTSRELDEE DKEIIDYIKD RKYIVLLNKV DLDRKLSSEI VDNLENKIEL
SAKTGFGIDD LKSKIKDLFF NGSIDAESVM VTNTRHKEAL YRASENLDGA LNGLNNNEFL
DLVSIYVTSA LRALGEITGA ELEEDLVNKI FAEFCCGK
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