| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPF_2989 |
|---|
| Symbol | gidB |
|---|
| ID | 4203784 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium perfringens ATCC 13124 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008261 |
|---|
| Strand | - |
|---|
| Start bp | 3249374 |
|---|
| End bp | 3250093 |
|---|
| Gene Length | 720 bp |
|---|
| Protein Length | 239 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 29% |
|---|
| IMG OID | 638083856 |
|---|
| Product | 16S rRNA methyltransferase GidB |
|---|
| Protein accession | YP_697343 |
|---|
| Protein GI | 110799944 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0357] Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division |
|---|
| TIGRFAM ID | [TIGR00138] 16S rRNA methyltransferase GidB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAATATT TTGATTTAAT GAAAAAAGCT TGCGATAGTG TGGGTATGGA ATTTAATGAA
GACAAATATC AAAAATTTAT GCTTTACAAA GATTTATTAA AGGAATGGAA TGAAAAAATA
AATTTAACGG CAATAACAGA GGATGAAGAG ATAGTAAAAA AACATTTTAT AGATTGTATA
AAAGCTTTTA AAGCAGATGA GTTTAAAAAA GCTAAGACAG TAATAGATGT TGGAACAGGT
GCAGGGTTCC CTGGGTTACC TATAGCTATT ATGAGAGAAG ATGTAGAGGT TACTCTATTA
GACTCATTAA ATAAGAGAAT AAATTTTTTA AATGAAGTTG TAAATAAACT AGGATTAAAA
AATGTTAAGA CTATACATTC TAGAGCAGAA GATGGTGCAA GAAAAAAAGA GTTAAGAGAA
AATTTTGATA TTGCTACATC AAGAGCTGTT GCTAATATGT GTGTTCTAAG TGAATTTTGT
ATTCCATATG TAAAGGTAAA TGGGAATTTT ATAGCTTTAA AAGGCCCAAA TATAACTGAA
GAGTTAAATG ATTCAAAAAA TGCTATTGGT ACTTTAGGTG GTAAGCTTAA AGGTATAACT
GAGGTTGAAA TTGAGGGAAC AGACTTAAAT CATAACTTAG TAATAGTAGA TAAAATAAAA
AGTACGCCAA AGACTTTTCC TAGAAAAGCA GGTAATGTAA CTAAGAAACC ATTAAAATAA
|
|---|
| Protein sequence | MQYFDLMKKA CDSVGMEFNE DKYQKFMLYK DLLKEWNEKI NLTAITEDEE IVKKHFIDCI
KAFKADEFKK AKTVIDVGTG AGFPGLPIAI MREDVEVTLL DSLNKRINFL NEVVNKLGLK
NVKTIHSRAE DGARKKELRE NFDIATSRAV ANMCVLSEFC IPYVKVNGNF IALKGPNITE
ELNDSKNAIG TLGGKLKGIT EVEIEGTDLN HNLVIVDKIK STPKTFPRKA GNVTKKPLK
|
|---|
| |