Gene CPF_2889 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCPF_2889 
Symbol 
ID4200995 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameClostridium perfringens ATCC 13124 
KingdomBacteria 
Replicon accessionNC_008261 
Strand
Start bp3159984 
End bp3160655 
Gene Length672 bp 
Protein Length223 aa 
Translation table11 
GC content29% 
IMG OID638083756 
ProductDNA-binding protein 
Protein accessionYP_697253 
Protein GI110798931 
COG category[K] Transcription 
COG ID[COG1813] Predicted transcription factor, homolog of eukaryotic MBF1 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTAGAG TTGGGGAAAG AATAAAAGAG GCTAGACAAA AAAGTGGAAT GACACAAAAA 
GCTTTAGCTA AAAAGCTAGG TGTAGCTGAG AAGTTTGTAA ATGAAGTTGA AACAGGAAGA
AAAATTATAA ATGAATCACT TATATCAAAG GTATCAAAGG TTTTAAATAC TGATTTAAAT
GATATAAATA TGGTTGTTAC TGATGAGGAA CTTCAAAAAG AACTTAAAGC TGAAAAGCAA
GTAAGACAAA CAAAACCAGC AGAGGTTAAT GAAGTTTGGA ATCAAGCCTT TGGATCAGTT
TTAAAAAATG TTCCAATATA TGATTATTCA TTAGCTCAGG TTAAGGGATA TAAACAACTT
GCCACTGCTT CAAATAAAAT AGATGGTCAT ACAGCAAACA AAGTTTTTTA TTTAAAAATA
GAAAATAATG ATATGACTGG CTATAGAATT CAAGAGAATG ATTTAGCTTT ATGCTATTCA
ATAAAAGAGA TAGAAAATAA TTCTATTTGT TTAGTTGAAT TCAATGGAAA AAGAGTTATT
AGACAAATTA AAAAGCTAGA TAACGTTAAG GCTTTACTAA TAAGCAATAA TGGTAGCATG
AGAACAGAGA CAGCTAACAT AAAAGAAATT AAGGCAATTG CTAAGCTTTA TAGAATAGAA
TTTGATTTAT AA
 
Protein sequence
MSRVGERIKE ARQKSGMTQK ALAKKLGVAE KFVNEVETGR KIINESLISK VSKVLNTDLN 
DINMVVTDEE LQKELKAEKQ VRQTKPAEVN EVWNQAFGSV LKNVPIYDYS LAQVKGYKQL
ATASNKIDGH TANKVFYLKI ENNDMTGYRI QENDLALCYS IKEIENNSIC LVEFNGKRVI
RQIKKLDNVK ALLISNNGSM RTETANIKEI KAIAKLYRIE FDL