| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPF_2807 |
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| Symbol | mfd |
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| ID | 4203160 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium perfringens ATCC 13124 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008261 |
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| Strand | - |
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| Start bp | 3065009 |
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| End bp | 3068497 |
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| Gene Length | 3489 bp |
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| Protein Length | 1162 aa |
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| Translation table | 11 |
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| GC content | 30% |
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| IMG OID | 638083675 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_697172 |
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| Protein GI | 110799729 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd)
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTCCCT TATTAAATAG TGAGGCTTTT CAAAAGGTTA AATCTTTTAT GGAAAGCGGA
AATTATCCAG TAATGATAAA TGGTTTATCT GATTCAGGGA AATCATATTT TATAAATGGT
ATATATGAGG AATCAGATAA GCCTATAGTT GTTGTTACGC ATAATGATAT TGAAGCTAGA
AATATATATG AGGATTTATC TTTTTACTTA CCTAATGTGT ATTATTTACC TTCAAGAGAG
ATTGTGTTTT ACAATATAGA TGCTATTTCT GGAGATTTAA GATGGGCAAG GTTAAAGGTT
ATAAAGGAAA TGCTAAGAAG CACTAAAAAA ATTATAGTTA CGTCTATAGA TGCTTTTGCA
GCAACTTATA CACCTAAGGA GCTTTATAAA AGTCATATAT TAAAAATTAA AGTTGGAGAT
GAAGTCGATT TTAAAGAGAT TTCTCATAAA CTTATTGAAT CAGGTTATGA AAGATTAGAA
ACAGTTGAAG GAAAAGGTGA ATTTTCATTA AGAGGAGGAA TATTAGATGT ATTTCCTCCT
AATTCTGCTA ATCCTTTTAG AATAGAGTTA TTTGGAGATG AAGTTGATTC TATTAGAACC
TTTAATGTAG AATCACAAAG AAGTATAGAA AAGGTAAAGA GAGCAGAAAT ATTCCCTGCT
AAGGAAGTTA TATTAAGTAA AGAAACTATA GAACATGCTA TAGAAAAGAT GAGAAAAGAA
CTTTCTGACT TTGAAAACAA AGTTTCTGAT AAGGAAATAA AAGAGAGACT TAGAAAATTA
ATAGAAAGAA ATATAGAATC ATTACAAGAA AATTGGAGCT TTGAAACTAT AGATAGTTAT
CTCCCATTTT TCTTTGATAA ACCAGCAACA TTATTTGATT ATTTAAATAA TTATACCTTT
ATAATTGATG ATGCTAAAAG ATGTAAGGGA AAGCTAGAAA GTACTGTATT TGAGTTTACT
GAAAACTATG AAGCCTTCCT AGAAAGAGGA AGCATATTAC CTTCTCAAAT TAATTTAAGC
TTAAGTGCTG AGGTGGTAGA AGAATCATTT AAGGGGAATA AAGTAATAAA TCTAGCTCCT
TTTGGAGATG GTGGATTTAT AGAATCCTTC AATAAAGTTG AAGTGAAACA AAGTACTAAA
AGTGGATATC AAGGTCAACT TGATATGCTT ATAGATGATA TAAAAGAGAA TAAGAAAAAT
GGATTTAGAA CTTTAATACT TTCAGGAACA AGACCAAGGG GAGAAAGATT AGTAAACACT
TTAAGAGAAT TAGAGATAGA AAGTGTATAT AAAGACGAAG TTGATGAAAT AAATAATGGA
GAAGTTGTAA TAACCTTTGG AGAGCAGAAT AAAGGATTTG AGTACCCAGA TATAAAACTT
TGTTTAATAT CAGATAAGAG TGTTTTTGGT GAGGGTAAAA GAGCTAAAAA AGCTAAGAGA
AAAAAATCAA AAGGTGTATC TAAAATTAAG AGTTTCGCTG AGTTAAAGCC AGGAGACTAC
GTAGTTCATG TAAATAGTGG TATAGGTGTC TATAAAGGAA TAAAACAAAT AGAAGTTCAA
GGACATAAAA GAGATTATTT AGATATTGAA TATTCAAAAG GTGATAAGTT ATATGTGCCA
GTTGAACAAT TAGATTTAGT TCAAAAATAT ATTGGATCAG ATAGTGCCTC TCCTAAGATA
AGTAAATTAG GAGGAAATGA GTGGCAAAAA GCTAAGGCTA AGGTAAGAAA GTCCATAAAT
GACATAGCTG GTGACTTAGT AAAATTATAT GCTGAGAGAT CTACTGTAAA GGGATATAAA
TTCTCAAAGG ATACTCAATG GCAAAAGCAA TTTGAAGATG AATTTCCATA TGAAGAAACA
CCAGACCAAT TATCAGCTAT TGAAGATATA AAGAGTGATA TGGAAACAAA CAAGGTTATG
GATAGATTAC TTTGTGGTGA TGTTGGGTAT GGAAAAACTG AGGTTGCCAT TAGAGCCGCA
TTTAAGGCCG TAATGGAAGG AAAGCAAGTA GCATTTTTAG TTCCTACAAC AATATTAGCA
GAGCAACATT ATAAGAATAT GAAAAAAAGA TTTGCAGGAT TCCCTATAAC TATTGATATG
ATAAGTAGAT TTAGGACTAA GAAGCAACAA ACAGAAACTT TAAAAGCTTT AAAAGAAGGA
AATGTTGATA TATTAATAGG AACTCATAGA CTTGTTTCTA AAGATATTCA GTTTAAGGAT
TTAGGGCTTC TTATTGTGGA TGAAGAGCAA AGATTTGGAG TAGCTCAAAA AGAAAAGATT
AAGAGTTTTA AGAAGAATGT TGATGTTCTT ACTTTAAGTG CAACGCCAAT ACCTAGAACT
CTTCATATGT CACTTACAGG GGTAAGAGAT ATTTCTGTAA TAGAGACTCC ACCAGAGAAT
AGATATCCTA TTCAAACCTA TGTTGTAGAA CAAAATGATC AACTTATTAG AGATGCAATT
TTAAGAGAAA TTAATAGAGA TGGTCAAGTT TATTTTGTTC ATAATAGAGT TGAAAGTATT
CAAGAGGTAG CTAATTATAT ACAAGAGCTT GTTCCAGAGT GTAAGGCAAC TGTTATTCAT
GGACAAATGA CAGAGAGACA GTTAGAAACT GAAATGATAG ACTTTATGGA AAGAAAGTAT
GATGTTTTAG TATGTACTTC CATAATAGAA ACAGGAATTG ATATTTCAAA TGTAAACACA
ATGATAGTAA ATGACGCAGA TAAAATGGGA CTTTCTCAGC TTTATCAATT AAGAGGAAGA
GTTGGTAGAA GTAACAAGGT TGCTTATGCA TATTTCCTAT ATCAAAGAGA TAAGGTGTTA
ACTGAGGTAG CAGAGAAGAG ACTTAAAGCC TTAAAAGATT TTACAGAGCT TGGATCAGGA
TTTAAAATAG CCATGAGAGA CCTTGAAATA AGAGGAGCTG GAAATATGAT GGGATCAGCT
CAGCATGGGC ACATGGCGGC TATAGGATAT GATTTATACT GTAGAATGTT AGAAGACACT
ATAAAAATTG TTAAGGGTGA AATAGAAAGA GAGCCAGTAG AGACAACTGT AGATTTAAAA
GTGGATGCAT TTATTCCTTC AAGTTATATA AAAGATGAAA TTCAAAAGAT TGAAGTATAT
AAGAAAATTG CTGCTATAGA AAATGAAGAG GATTATGAAT ATGTTAGAGA GGAATTAGAA
GATAGATTTT CTAATATACC AAATACAGTT TATAATCTTA TGGACATAGC TTATATAAAA
AGCAAAGCTA AACTTTTAAA TATTGAAGAA ATAAAAGAAA AGAATGAAGA TATAATATTT
ATATTTGAAA GTAGAGAAAG AACAGATAAG AGAATATTTA AAGTACTTTT AGAAGAATAT
AAAGATGATA TATTAATTGA ATTTGGAGAT AACCCAACAA TTTTATATAG AGTGAAGGAC
AAGAAAAAAG AAGATGTTTT ATCTACTTTT AAAGAGATGT TAGATAAGTT AATAGCTTTA
AATAATTAA
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| Protein sequence | MAPLLNSEAF QKVKSFMESG NYPVMINGLS DSGKSYFING IYEESDKPIV VVTHNDIEAR
NIYEDLSFYL PNVYYLPSRE IVFYNIDAIS GDLRWARLKV IKEMLRSTKK IIVTSIDAFA
ATYTPKELYK SHILKIKVGD EVDFKEISHK LIESGYERLE TVEGKGEFSL RGGILDVFPP
NSANPFRIEL FGDEVDSIRT FNVESQRSIE KVKRAEIFPA KEVILSKETI EHAIEKMRKE
LSDFENKVSD KEIKERLRKL IERNIESLQE NWSFETIDSY LPFFFDKPAT LFDYLNNYTF
IIDDAKRCKG KLESTVFEFT ENYEAFLERG SILPSQINLS LSAEVVEESF KGNKVINLAP
FGDGGFIESF NKVEVKQSTK SGYQGQLDML IDDIKENKKN GFRTLILSGT RPRGERLVNT
LRELEIESVY KDEVDEINNG EVVITFGEQN KGFEYPDIKL CLISDKSVFG EGKRAKKAKR
KKSKGVSKIK SFAELKPGDY VVHVNSGIGV YKGIKQIEVQ GHKRDYLDIE YSKGDKLYVP
VEQLDLVQKY IGSDSASPKI SKLGGNEWQK AKAKVRKSIN DIAGDLVKLY AERSTVKGYK
FSKDTQWQKQ FEDEFPYEET PDQLSAIEDI KSDMETNKVM DRLLCGDVGY GKTEVAIRAA
FKAVMEGKQV AFLVPTTILA EQHYKNMKKR FAGFPITIDM ISRFRTKKQQ TETLKALKEG
NVDILIGTHR LVSKDIQFKD LGLLIVDEEQ RFGVAQKEKI KSFKKNVDVL TLSATPIPRT
LHMSLTGVRD ISVIETPPEN RYPIQTYVVE QNDQLIRDAI LREINRDGQV YFVHNRVESI
QEVANYIQEL VPECKATVIH GQMTERQLET EMIDFMERKY DVLVCTSIIE TGIDISNVNT
MIVNDADKMG LSQLYQLRGR VGRSNKVAYA YFLYQRDKVL TEVAEKRLKA LKDFTELGSG
FKIAMRDLEI RGAGNMMGSA QHGHMAAIGY DLYCRMLEDT IKIVKGEIER EPVETTVDLK
VDAFIPSSYI KDEIQKIEVY KKIAAIENEE DYEYVREELE DRFSNIPNTV YNLMDIAYIK
SKAKLLNIEE IKEKNEDIIF IFESRERTDK RIFKVLLEEY KDDILIEFGD NPTILYRVKD
KKKEDVLSTF KEMLDKLIAL NN
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