Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPF_2789 |
Symbol | spoIIE |
ID | 4203810 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium perfringens ATCC 13124 |
Kingdom | Bacteria |
Replicon accession | NC_008261 |
Strand | - |
Start bp | 3053682 |
End bp | 3056072 |
Gene Length | 2391 bp |
Protein Length | 796 aa |
Translation table | 11 |
GC content | 28% |
IMG OID | 638083657 |
Product | stage II sporulation protein E |
Protein accession | YP_697161 |
Protein GI | 110800430 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG2208] Serine phosphatase RsbU, regulator of sigma subunit |
TIGRFAM ID | [TIGR02865] stage II sporulation protein E |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.113996 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAATATG GAGTTAAAAT TGATAATTAC AAAAGAGCAA AGGATTCAGA AAATGTAAAA AATAATATGA AAATAGAAGC TTCTAGCATT GGGCTTATTA TGGCTATGGT TGCAGGTCTT TTAATAAGTA GAGTGTATTT AGATATGACT TTTGGAGTAG TTCAAGTATT AGCTCCATTT GGATTAGCAT ATTTAATTGC AATAACAAAT TATGAAAGAA AATATATATT ATCATCAAGT TTAGGAGTTA TATTAGGGTA TATTACCTTG TTTAATAAGG TTAGCAACTT TTCGGCTTAC ATAATAATAT CAACTATAGT TACCATAATT TCTATGAGTA AACTAAATAA AAAGGCTAGA AATATAGCAA GTTTTATTAT TGTATTTTCA GGATTGTTTG TTTATGGAGT TTTAGTAGGA AGTTCAGATA TAATTTTACA CTTAATAGGT GCGATTTCAG TGACAGCCTT AGTTTTTCCT ATATATTATG TTGTGAGCTA TACATTAAAG TGCATAGAAG AAATAAATAC TCAACATTTT TTCTCAATAG ATGAAATTGT AAGTATAGAA CTATTTATAT GTTTATTAAT AGTTGGAATT GGAACTCTAT CACTAAATGA TATTAGTTTT AGAAATATAG CAGCTATACT TTTTATTATA GTTTTAGCCT TTATTTCAGA TACAAATATG GGTGCTGGAG CAGGTATAAC TATGGGCATA ATATTAGGTT TTGCCACAGG GAATCTTATG GAGAGCATAG CTATTTATGG AGCTTGTGGC TTAGTTGCAG GGATATTTAG AGAGTCAGGA AAGCTTTTTA CAGCCTTATC ATTTAACATA ATTTTTATAA TAGTAACTTT ATATTCTGGA GTTTTTAATA ATATTTCATT TATAGAAGCC TTAGTTGGAA CAGGAATATT TCTTTTAATT CCTAAAAAAA TATACAATAA AATTTCTTTA GAGATAAACA AGGATAAAAA GGTTGGTCAT TTTAGTGAAG TTAGATTTGC TGAGATTAAG GATGAGTTAA CTGAAAGATT AAAAGATTTT ACTGAAGTTT TATCTATAAT GGGTAAGTCA CTAAATAATC TAGTTGGTAA TGATAAATTA GCTATAAAAA ATAAGGGTAA TGCATTGGTT GAAAATTTAT CAGATAGAAC TTGTAGTGAC TGTGATATGA GATATATGTG TTGGAAGAGA GAGCTTCATC AAACTTATAA TGCTTTTTCA GATTTAATAA GAAATTATGA AAATAATTCA GGTGCTTTTC CTCATGAGCT TGAGAAAAAG TGCATAAAGA AATATGCTCT AGTTAAAAAT TTAGAGGACA TAATGAATAT CTATATGGTA AATGAAACCT TAAAGAGTAG ATTAGGAGAG GGAAGAAAAA TCTTATCTAA TCATATAAAC AATATGTCAG TTACAATTAG TGAAATAGTT GACGAGTTTG GAAATGAACT GCATCTATGT ACTGATGTAG AGAAAAGCAT AAAAAAATCT CTTTTAAAGT ATGGCATTAA TTTTGGAAGC TTAATATGTT ATAACGATAA AAATGGAAGA ATTAAAATTA AGATGCAAAT GGAAAATTGT ATGGGATCTC AAACATGTAT AAAAACAGTT CTTCCTATAA TAAGCGAGAC CATAGGAAAA AATATGAGTA TTGGAAGTGA AGGGTGTAAT ATAAATAGCA AAAATAATAT GTGTGAGATT GTTATTGAAG AAGCGCCTAA ATATCATATT AATTCCCATG TAGCAGTTGC TACTAAAGAG GGAGAAAAAT TCACTGGAGA TTCATATTCA TATGGTAGAA CAAAGGATGG TAATTATATA ACTGTAATAT CAGATGGCAT GGGATCAGGA CCTGAAGCAG GACTTGAAAG TAAAGTTTCA GTAGAAATAA TAGAAAAATT TATGGAAGTT GGTTTTGATG AAAAAATAGC TATTGATGCA GTTAATGCAA TTATGAGTAT AAAGTTTAGT GAAGATGAAA AGTTTTCTAC ATTAGATATG AATAAGATAG ACTTATATAC TGGAAATGCT AAGTTTATGA AAGTTGGAGC TATAGAAAGC TTTATAAAGA GAGGAAATAA AGTAGAAGTT ATAAATTCAA ATACACTTCC CTTTGGTGTC TTAGAAGAAC CAGATGTAGA TACTGTTGAA AAGCAAGTAA GTAATGGGGA TGTAATAGTT AGTATAAGTG ATGGTATTTT AGATGTTAAA AATGATGGAA GTTTTGATAC TACATGGTTA ATTGAATTTT TAAAGAATAC TAAGTATAGA CAACCTAAGG ATTTATCAAT AGCTATTTTA GAAAAAGCAA AGGAATTAAG TGGAGGAAAG GCTAAGGATG ATATGACAGT AGTTGTATCT AAGGTTTTTG CAATAAATTA A
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Protein sequence | MQYGVKIDNY KRAKDSENVK NNMKIEASSI GLIMAMVAGL LISRVYLDMT FGVVQVLAPF GLAYLIAITN YERKYILSSS LGVILGYITL FNKVSNFSAY IIISTIVTII SMSKLNKKAR NIASFIIVFS GLFVYGVLVG SSDIILHLIG AISVTALVFP IYYVVSYTLK CIEEINTQHF FSIDEIVSIE LFICLLIVGI GTLSLNDISF RNIAAILFII VLAFISDTNM GAGAGITMGI ILGFATGNLM ESIAIYGACG LVAGIFRESG KLFTALSFNI IFIIVTLYSG VFNNISFIEA LVGTGIFLLI PKKIYNKISL EINKDKKVGH FSEVRFAEIK DELTERLKDF TEVLSIMGKS LNNLVGNDKL AIKNKGNALV ENLSDRTCSD CDMRYMCWKR ELHQTYNAFS DLIRNYENNS GAFPHELEKK CIKKYALVKN LEDIMNIYMV NETLKSRLGE GRKILSNHIN NMSVTISEIV DEFGNELHLC TDVEKSIKKS LLKYGINFGS LICYNDKNGR IKIKMQMENC MGSQTCIKTV LPIISETIGK NMSIGSEGCN INSKNNMCEI VIEEAPKYHI NSHVAVATKE GEKFTGDSYS YGRTKDGNYI TVISDGMGSG PEAGLESKVS VEIIEKFMEV GFDEKIAIDA VNAIMSIKFS EDEKFSTLDM NKIDLYTGNA KFMKVGAIES FIKRGNKVEV INSNTLPFGV LEEPDVDTVE KQVSNGDVIV SISDGILDVK NDGSFDTTWL IEFLKNTKYR QPKDLSIAIL EKAKELSGGK AKDDMTVVVS KVFAIN
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