| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPF_2756 |
|---|
| Symbol | |
|---|
| ID | 4201417 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium perfringens ATCC 13124 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008261 |
|---|
| Strand | - |
|---|
| Start bp | 3016296 |
|---|
| End bp | 3017978 |
|---|
| Gene Length | 1683 bp |
|---|
| Protein Length | 560 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 28% |
|---|
| IMG OID | 638083621 |
|---|
| Product | Mur ligase family protein |
|---|
| Protein accession | YP_697134 |
|---|
| Protein GI | 110800740 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0769] UDP-N-acetylmuramyl tripeptide synthase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTAGGAA GGGTGAGTGA TTTGAAACTA AAGGATTTAA GAGTTCTAGA GGGGAGAAAT
ATAAAGGGAG AAGAAAATCT TATATTTATA GACATAGAGG AATCTGAAAG AAAAAGATTA
TATTGGTTAA TAAGTGATTA TGAGTTCATA TGCAGAAAGA TGAATATTGA AGGTACCTTA
AAAGAGGCTA TATATAATGA GTTTGGAGGA TGTGCGTGGT TAACTTACTC TAATAAGGAA
TTAGCTTTAT TTATAATTGA AAGCTTAATA GAGGGAGTAA GTGCAGATAA ATTATTAAAT
GAAGCTGTAG CTAAAAAGCA ACGGATTTGG GAGTATAACT TATTAGAAGA GTGTTCTAAG
AAAAAAATAG ACTTCTTTAA AGAGGATGAT GAAATAATAG TAGGGTATGG AGTTAATTCT
AAGAGAATAA GTAAAGAGGA TTATGAAAAT AAAAATTATA ATCTGGATTT AATAAATAAT
GGAGTTATTC CTATAGTATC TATAACAGGA ACTAATGGTA AAACATCTAC TTCAAGATTA
ATATACAAAG GTTTTGAGAA TTTAGGGTAT TTCTCTGGAT TAGCTATGAC TGGTGGAATA
ATTATAAATA ATGAGTTTGT AAAGAAGGGA GATACTACAG GATTTTATAG TGCTAAAAAG
GTTCTTACCA ATCCACAGGT TGAAGTTGGG GTTTTAGAGA CTGCTAGAGG TGGTATTTTA
AGAAAGGGAT TAGGATTTAA AAATTCTAAG GTTGCCATAA TAACATCCTT AGCAGAGGAC
CACATAGGGG TAGATGGAAT AAAAGATATT AATGATTTAC TAGATATAAA ATTAATTACA
ACTAGAGAAG TTTTACCAGA AGGAAAAGTA ATAATAAAGG CAGAACCAAA GCTATATGAA
GTTCTACAGA CAAAAGAAAA TTTAGTTTTA TTTAATTCTA AAAAGAATGA ATATATTGAA
AAACACATGA AAAATGGTAA GGAAGCTTGG TTCGTAGAGG ATGAAAATGT AATATTTTTT
GATGGTAAAG ATAAAAATAT TATCTCTAAT ATAAAAGATT TTAAGTTTAC TCATAATGGT
AATTCAAAAA CTAATATAAA TAATATTTTG GTATCTATAG CTGCTATATA TGAAGTACAT
AAAAATTTAA GGGAAGTAGT GGATTCCTTA AAAAATATAG AGTGTGATGT CTATAACAAT
ATTGGAAGAC AAAACATAAT TGAACTTGAA AATTTTAAGA TTATATTGGA CTATGGTCAT
AATCCAGAAG CCTTTGAGGA ATTATTTTAC TTAGCTAATA ATATCAAAAG AAATAAGATA
ATTTCTATAG TTTCATCACC AGGAGATAGG CTTGATGAAT ACATAAAAGA ATTAGGAAAA
ATAGCAGGAA AAAATTCAGA TACTATTATA ATAAAAGAAA CCTTTGATAG AAGGGGAAGA
GAGGAATTAG AAATAACTAA TTTAATAAAA AGTGGGATAA ATGAAGTTGA AAATAAATCA
GTAGAAGTAT TATCAATAAT AGATGAAGAA GAAGCTATCA AAAAGGCAAT ATCAATGGCC
AAAGAAGGTG ATATTATAGT AGATTTTACT CAACATTTAG ATGTAGTAAT CCCTGTTATA
AATAAATACT TATCTCATCA TGGAAAAGAA ATTATAGAGG TTGATTTAGA AGACTTTCAC
TAA
|
|---|
| Protein sequence | MVGRVSDLKL KDLRVLEGRN IKGEENLIFI DIEESERKRL YWLISDYEFI CRKMNIEGTL
KEAIYNEFGG CAWLTYSNKE LALFIIESLI EGVSADKLLN EAVAKKQRIW EYNLLEECSK
KKIDFFKEDD EIIVGYGVNS KRISKEDYEN KNYNLDLINN GVIPIVSITG TNGKTSTSRL
IYKGFENLGY FSGLAMTGGI IINNEFVKKG DTTGFYSAKK VLTNPQVEVG VLETARGGIL
RKGLGFKNSK VAIITSLAED HIGVDGIKDI NDLLDIKLIT TREVLPEGKV IIKAEPKLYE
VLQTKENLVL FNSKKNEYIE KHMKNGKEAW FVEDENVIFF DGKDKNIISN IKDFKFTHNG
NSKTNINNIL VSIAAIYEVH KNLREVVDSL KNIECDVYNN IGRQNIIELE NFKIILDYGH
NPEAFEELFY LANNIKRNKI ISIVSSPGDR LDEYIKELGK IAGKNSDTII IKETFDRRGR
EELEITNLIK SGINEVENKS VEVLSIIDEE EAIKKAISMA KEGDIIVDFT QHLDVVIPVI
NKYLSHHGKE IIEVDLEDFH
|
|---|
| |