Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPF_2732 |
Symbol | sigH |
ID | 4202433 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium perfringens ATCC 13124 |
Kingdom | Bacteria |
Replicon accession | NC_008261 |
Strand | - |
Start bp | 2993392 |
End bp | 2994039 |
Gene Length | 648 bp |
Protein Length | 215 aa |
Translation table | 11 |
GC content | 28% |
IMG OID | 638083598 |
Product | RNA polymerase factor sigma-70 |
Protein accession | YP_697111 |
Protein GI | 110798736 |
COG category | [K] Transcription |
COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
TIGRFAM ID | [TIGR02859] RNA polymerase sigma-H factor [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.814856 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGGGATTA CTTATGATTT GGCTAAAATC AATAATTATG AAGAATTTAA AGATTTAACA GATAAAGAAG TAGTTATGCT AGCTAAAAAT GGTGATAATA TGGCTCAAGA ATATGTAATA AGTAAGTATG AGCAGTTTGT AAAAGCTAAA TCTAAATCAT ATTTTCTTAT AGGAGCAGAT AAAGAAGATA TATATCAAGA GGGAATGATT GGATTATATA AAGCAATAAG AGATTTTAAT CCAGATAAGT TTGCATCATT TAAAAGTTTT GCAGAACTTT GTGTTACAAG GCAGATAATA ACTGCTATAA AAACTGCAAC AAGGCAAAAA CATATCCCAT TAAACACTTA TATTTCTTTA AGCAAACCTA TTTACGAGGA AGAATCTGAT AGAACGCTTT TAGATACTGT AGTAGGAATA ACAATTACAG ATCCTGAATC ATTGGTCATA GGTAAAGAAG AGGTTGAAAA AATAGAAAGT GCAATTAATA GTGTGCTTTC TGAACTAGAA TTAGAGGTAT TAAATTCTTA TTTAGATGGT AAATCATATC AAGAAATTGC CTGTGATTTA GATAGAGAAG CTAAATCTAT AGATAATGCA TTACAACGTG TAAAAAGAAA GCTTGAAAAA TGTTTAAACA TTAAATAA
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Protein sequence | MGITYDLAKI NNYEEFKDLT DKEVVMLAKN GDNMAQEYVI SKYEQFVKAK SKSYFLIGAD KEDIYQEGMI GLYKAIRDFN PDKFASFKSF AELCVTRQII TAIKTATRQK HIPLNTYISL SKPIYEEESD RTLLDTVVGI TITDPESLVI GKEEVEKIES AINSVLSELE LEVLNSYLDG KSYQEIACDL DREAKSIDNA LQRVKRKLEK CLNIK
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