Gene CPF_2708 details

Gene Information

• Locus tag: CPF_2708
• Symbol: rpsC
• ID: 4202001
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Clostridium perfringens ATCC 13124
• Kingdom: Bacteria
• Replicon accession: NC_008261
• Strand: -
• Start bp: 2971023
• End bp: 2971691
• Gene Length: 669 bp
• Protein Length: 222 aa
• Translation table: 11
• GC content: 35%
• IMG OID: 638083574
• Product: 30S ribosomal protein S3
• Protein accession: YP_697088
• Protein GI: 110800643
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0092] Ribosomal protein S3
• TIGRFAM ID: [TIGR01009] ribosomal protein S3, bacterial type

Plasmid Coverage information

• Num covering plasmid clones: 76
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGGACAAA AAGTACATCC TCACGGACTA AGAGTTGGTG TAATTAAAGA TTGGGATGCA 
AAATGGTATG CTGATAAGAA AAATTTTGCT GATAACTTAA TCGAAGACCA ACAAATAAGA 
AAATTCATAA AGAAAGAACT TTTCTCAGCT GGAATCGCTA AGATTGAAAT CGAAAGATCA 
GCTAAAAGAG TTAAGTTAAA CATACACACA GCTAAGCCAG GTGTAATCAT CGGAAAAGGT 
GGTTCAGGAA TCGAAAGATT AAAAGCTAGC TTAAAAAATA TAATAGCTGA GAAAAATGTT 
TTAATAAACA TTGTTGAGGT TAAGAACGCT GAAACTAACG CTCAATTAAT GGCTGAAAAC 
ATTGCTGCTC AATTAGAAAA GAGAATATCA TTCAGAAGAG CTATGAAGCA AACTATCCAA 
AGAGCAATGA AAGCTGGCAC ATTAGGTGTT AAAACTGCTT GTTCAGGAAG ATTAGGTGGA 
GCTGAAATAG CAAGAACTGA GCAATACAAT GAAGGAACAA TCCCACTACA AACAATAAGA 
GCTGACATCG ACTATGGATT TGCTGAAGCT GATACAACTT ACGGTAAAAT CGGTGTTAAA 
GTGTGGGTTT ACAATGGAGA AGTTCTTCCA ACTAAAAAAG TTGAAAAAAA GGAAGAAGCT 
AACGCATAA 

 

Protein sequence

MGQKVHPHGL RVGVIKDWDA KWYADKKNFA DNLIEDQQIR KFIKKELFSA GIAKIEIERS 
AKRVKLNIHT AKPGVIIGKG GSGIERLKAS LKNIIAEKNV LINIVEVKNA ETNAQLMAEN 
IAAQLEKRIS FRRAMKQTIQ RAMKAGTLGV KTACSGRLGG AEIARTEQYN EGTIPLQTIR 
ADIDYGFAEA DTTYGKIGVK VWVYNGEVLP TKKVEKKEEA NA