| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPF_2685 |
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| Symbol | rpoA |
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| ID | 4201297 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium perfringens ATCC 13124 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008261 |
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| Strand | - |
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| Start bp | 2959822 |
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| End bp | 2960769 |
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| Gene Length | 948 bp |
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| Protein Length | 315 aa |
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| Translation table | 11 |
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| GC content | 32% |
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| IMG OID | 638083551 |
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| Product | DNA-directed RNA polymerase subunit alpha |
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| Protein accession | YP_697065 |
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| Protein GI | 110799041 |
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| COG category | [K] Transcription |
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| COG ID | [COG0202] DNA-directed RNA polymerase, alpha subunit/40 kD subunit |
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| TIGRFAM ID | [TIGR02027] DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGTTAGAAA TAGAAAAGCC AGTAATTCAA TGTGTTGAAT CAAACGATAA CGGAACATAT
GGTAAGTTTG AGATAGAACC ATTAGAAAGA GGTTATGGAA TAACTCTTGG TAATGCATTA
AGAAGAATAT TACTTTCTTC TTTACCTGGA GTGGCTCCAA CTTCAGTTAA AATAGATTCA
GTTCTTCATG AGTTTTCAAC AATAACAGGT GTTAAAGAAG ATGTTACAGA GATAATCTTA
AATCTTAAAA TGTTAGCACT TACTATGGAA GGTGAAGGAC CAAAAACTAT TTATATTGAT
GCTCAAGGAC CAGGTGTTGT TACTGGAGCA GATATAAAAA CAGATGGTGA TGTAGAAGTT
GTAAACAAAG ATCTACATAT CGCTACATTA GACAACGATG GTAAGTTATA TATGGAAATC
GTAGTTAATA GAGGAAGAGG ATATGTTACT CAAAACAAAA ATAAAACAGA AGATCTTCCA
TTATCAGCTA TTGCTATAGA TTCTATATAC ACTCCTGTAA AGAGAGTTAA TTTCTCTGTT
CAAAATACAA GAGTTGGTCA AATTACTGAC TATGATAAAC TTACATTAGA AATTTGGACT
AATGGAACTA TAAGAATAGA AGAAGCGATT TCATTATCAG CTAAAATTCT TATAGAGCAC
TTCAAATTAT TCATGACTTT AACTGACAAC GCTAATGATG TTGAGATAAT GATTGAAAAA
GAAGAAGATA AAAAAGAAAA AGCTTTAGAG ATGACTATAG AAGAGCTTGA CTTATCAGTA
AGATCATACA ATTGCTTAAA GAGAGCAGGT ATAAACACTG TTCAAGAGCT TGCGGGCAAG
AGCATGGATG ATATGATGAA AGTTAGAAAC TTAGGTAAGA AATCTCTAGA AGAAGTAGAA
AGAAAGTTAA ACGAGTTAGG CTTAAATTTA AGACTAAATG ACGAGTAG
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| Protein sequence | MLEIEKPVIQ CVESNDNGTY GKFEIEPLER GYGITLGNAL RRILLSSLPG VAPTSVKIDS
VLHEFSTITG VKEDVTEIIL NLKMLALTME GEGPKTIYID AQGPGVVTGA DIKTDGDVEV
VNKDLHIATL DNDGKLYMEI VVNRGRGYVT QNKNKTEDLP LSAIAIDSIY TPVKRVNFSV
QNTRVGQITD YDKLTLEIWT NGTIRIEEAI SLSAKILIEH FKLFMTLTDN ANDVEIMIEK
EEDKKEKALE MTIEELDLSV RSYNCLKRAG INTVQELAGK SMDDMMKVRN LGKKSLEEVE
RKLNELGLNL RLNDE
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