| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPF_2569 |
|---|
| Symbol | |
|---|
| ID | 4203820 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium perfringens ATCC 13124 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008261 |
|---|
| Strand | - |
|---|
| Start bp | 2833642 |
|---|
| End bp | 2834847 |
|---|
| Gene Length | 1206 bp |
|---|
| Protein Length | 401 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 30% |
|---|
| IMG OID | 638083436 |
|---|
| Product | type II secretion system protein F |
|---|
| Protein accession | YP_696959 |
|---|
| Protein GI | 110800691 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1459] Type II secretory pathway, component PulF |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAATTT TTAAATATAA AGCTATTAAT TCAGAAGGAC AAAGAATAGA AGGTTCTCAA
AGTGCTGATT CTGAAAGTCA AATCAGGGAA ATGCTTTTAT CAAATCAATA TTATCCTCTA
AGTATAGAAA AGGAAAATAG TAAAAGTAAA AAGAGTTTTT CTTTTAATAG TAAAGTGAAG
CTTAAGGATA TAGCAGTATT TTGTAGACAG TTTTATGTTA TGTTAGATTC TGGATTGTCT
ATTGGTAAGG CTTTAAATAT ATTAATAGAA CAATGTGAGA AACCAAAGCT TAGGGAAGCC
TTAATTGGAG TAAACGGAGA GTTGAAAAGA GGAGAAACCC TAGCAAGTTC CATGAGAAAA
AGAAAAGATG TTTTTCCTAA CTTACTTACT AGTATGATTG ATGCTGGAGA GAGAAGTGGT
AACTTAGATA TAATCTTAAA AAGAATGGCT GAGTACTACG AAAAAGAGAC AAAGATTAGA
GGAAAGATTA AAAGTGCTAT GATTTATCCT ATAGTTCTTG GAGTGGTAGC TATTATTGCT
ATTACTTTTA TTCTTACCTT TGTAATGCCA ACATTTGTGC AGATGTTTGA AGAAAACAAT
GTAGACCTTC CAATGGCGAC TAAGATGGTT CTTGGGACAA GCAAAATGTT AGGTAAGTAT
GGAATTATAA TTTTTTTAAT TTTAGTAACA GCAATTATAT TACTTGTCAA ATATTTAAAG
AGTGAAGAGG GTCAATATAA ATTAAGTTCA ATAAACTTAA AAATTCCAGT AATAAAGAAA
TTAACTCAAA AAATAATAGT TTCTAGATTT ACAAGAACTA TGGGAATAGT ATCATCAAGT
GGAATGTCTT TAGTAACCTC TATAGAAATA GTTGCCTCTG TAGTTGGAAA TAAAATTGCA
GAAAAGGAAT TATTAAAAGT AAAAGAAAAG GTCTTAAAAG GGGAAGGGTT AGGAGATTCA
ATAATGAATA TAAAAATCTT CCCGCCAATG CTTGCTTCCA TGGTTAAGAT TGGAGAGGAA
GCTGGTTCAT TAGATAGCAT ATTAGATAAA ACAGCAGACT TTTATGATGA TGAACTAGAA
AGAGAAATAA AAACAGCAAC AGCCTTAATA GAGCCATCAA TGATAGTTCT TATGGGAATA
ATTATAGGAT TTCTACTAAT TTCAATATTA ACACCTATGT TTAAAATGTA TAACAGTATA
AGTTAG
|
|---|
| Protein sequence | MAIFKYKAIN SEGQRIEGSQ SADSESQIRE MLLSNQYYPL SIEKENSKSK KSFSFNSKVK
LKDIAVFCRQ FYVMLDSGLS IGKALNILIE QCEKPKLREA LIGVNGELKR GETLASSMRK
RKDVFPNLLT SMIDAGERSG NLDIILKRMA EYYEKETKIR GKIKSAMIYP IVLGVVAIIA
ITFILTFVMP TFVQMFEENN VDLPMATKMV LGTSKMLGKY GIIIFLILVT AIILLVKYLK
SEEGQYKLSS INLKIPVIKK LTQKIIVSRF TRTMGIVSSS GMSLVTSIEI VASVVGNKIA
EKELLKVKEK VLKGEGLGDS IMNIKIFPPM LASMVKIGEE AGSLDSILDK TADFYDDELE
REIKTATALI EPSMIVLMGI IIGFLLISIL TPMFKMYNSI S
|
|---|
| |