| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPF_2562 |
|---|
| Symbol | |
|---|
| ID | 4203117 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium perfringens ATCC 13124 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008261 |
|---|
| Strand | - |
|---|
| Start bp | 2828026 |
|---|
| End bp | 2829027 |
|---|
| Gene Length | 1002 bp |
|---|
| Protein Length | 333 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 24% |
|---|
| IMG OID | 638083429 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_696952 |
|---|
| Protein GI | 110801196 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0991662 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGGATCA AAAAAAGAAA AAGTAAAAAA GGGTTTACAG TAATAGAAGC TATAATTAGT
TTGGTTTTGT TTACTTTAAT AATGATACCC CTAGGTAGCT TTACTTTAAC TGCAGTTAAA
ACATCAGTAA AAAGTGGTGA AAAGCAGCAA GCTATAGATA TTGCTCAAAG TACCATAGAA
CAAATAAAAG CATTAAAAAT TGATAAATTA TATAATTTAT CCACATATCC CGATAAAAAT
AAAATAGTAT TGAATAATGG AATGATTATA ACTTTAAATA AAGAAAATAA TAGTCAAGAC
AACTTTGATT CTTATAAAGT TAGTGGTATT TTTAAACCTA ATAATACAAA TAAGAGTTTT
GAGATTGAGG GTACTATAAC TCCAAATTTA AATGATTATA ATCATAATAA AAGCGAAGAA
AATAAAGAGA GTGAAAAATT AGACTTTAAT TATTGTGTTT ATATTGGGAA TACTAGTATA
AATGTTTATA AAATAGTAAA TAGGGTATGG TACAGATTAA AATATAAAAG AATTGACAAT
GAAAATAATG ATTTACTTGA ATTGAGTATA GATAAGAATA TTGAAGGTGA AGTCGATATT
AGATTAACAC ATGAAACTGA TATAGATGTA TCACCAAATA CTGATAATGT AAAAACTAAA
AAGGATTTGA ATGAATCAGA TCTATTAGAT AAAGATAAAG AGTCTAAAGT TAAAGTTCTT
TTTTATGAAG ATGAAAAAAA TAAAGCTATA AAGTTGAAAG CTTGTAATAG TGATATAAAT
GGTGATTTAA GTGTATATGC TTATAAATAC AAGGGGAGTG GTGTAAGGTA TTATGATAAT
ATTAAAAATA CTAATCCTCA AGGAATAGTT AAAATTTATA AAAACTATGT TGAGAAATCA
CCTTATGACA ATAAAGTTGG TTTATATGAT ATAGATTTAA ATGTTAATTA TGGAAATCAA
GAGATATATA GTATAAAGGC TACAGAATTT ATAGGAGAGT GA
|
|---|
| Protein sequence | MGIKKRKSKK GFTVIEAIIS LVLFTLIMIP LGSFTLTAVK TSVKSGEKQQ AIDIAQSTIE
QIKALKIDKL YNLSTYPDKN KIVLNNGMII TLNKENNSQD NFDSYKVSGI FKPNNTNKSF
EIEGTITPNL NDYNHNKSEE NKESEKLDFN YCVYIGNTSI NVYKIVNRVW YRLKYKRIDN
ENNDLLELSI DKNIEGEVDI RLTHETDIDV SPNTDNVKTK KDLNESDLLD KDKESKVKVL
FYEDEKNKAI KLKACNSDIN GDLSVYAYKY KGSGVRYYDN IKNTNPQGIV KIYKNYVEKS
PYDNKVGLYD IDLNVNYGNQ EIYSIKATEF IGE
|
|---|
| |