| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPF_2546 |
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| Symbol | |
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| ID | 4201980 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium perfringens ATCC 13124 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008261 |
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| Strand | - |
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| Start bp | 2804968 |
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| End bp | 2805687 |
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| Gene Length | 720 bp |
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| Protein Length | 239 aa |
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| Translation table | 11 |
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| GC content | 30% |
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| IMG OID | 638083413 |
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| Product | 16S pseudouridylate synthase |
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| Protein accession | YP_696936 |
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| Protein GI | 110800371 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGGAAAGAT TGGATAAGGT TTTATCAAAC TTAGGATACG GAACGAGAAA AGAAATAAAG
CAAGTTGTTA AAAAAGGATT TGTAACAGTT AATGATGAGA AGGTTAAAGA TAGTGGACTT
CAAATAGATC CTGAGAAAGA TACAATAGTT ATAAATGGGG AAAAAGTAGA GTATAAAAAG
TACATATATT TAATGATGAA TAAGCCAGCT GGAGTAATTT CAGCAACTTA TGATAAGAGA
GATGAAACTG TTATCGACTT ATTATATATG GAAGATCAAG TTTTTGAACC ATTTCCAGTA
GGAAGACTTG ATAAAGATAC AGTGGGATTA TTATTATTAA CTAATGATGG GGATTTAAAT
CATAAATTAA TTTCACCTAA ATACCATGTT GATAAGGTTT ATTATGCAGA AATAAATGCT
CCTATAACAG AAAAAGATAT TAAAGCTTTC GAAAATGGTG TAACTTTAGA TGATGGATAT
AAATGTATGA GTGCAAAGCT TAAGGTTATA GAAAATTTAG AGGATTCATC TAGAGTAGAA
GTTACAGTTC AAGAGGGGAA ATATCATCAA GTAAAAAGAA TGTTTGAAGC TAGAGGGAAA
AAGGTTGTTT ATTTAAAAAG AACTTCTTTT GGAAATCTTC CACTTGATGA AAGTTTAGAA
GAAGGCGAAT ATAAAGAGCT TTCAGAAAGT GAATTAGCGG TACTTTACAA AAATTTTTAA
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| Protein sequence | MERLDKVLSN LGYGTRKEIK QVVKKGFVTV NDEKVKDSGL QIDPEKDTIV INGEKVEYKK
YIYLMMNKPA GVISATYDKR DETVIDLLYM EDQVFEPFPV GRLDKDTVGL LLLTNDGDLN
HKLISPKYHV DKVYYAEINA PITEKDIKAF ENGVTLDDGY KCMSAKLKVI ENLEDSSRVE
VTVQEGKYHQ VKRMFEARGK KVVYLKRTSF GNLPLDESLE EGEYKELSES ELAVLYKNF
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