| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPF_2541 |
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| Symbol | ligA |
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| ID | 4202605 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium perfringens ATCC 13124 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008261 |
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| Strand | - |
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| Start bp | 2797896 |
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| End bp | 2799884 |
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| Gene Length | 1989 bp |
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| Protein Length | 662 aa |
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| Translation table | 11 |
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| GC content | 31% |
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| IMG OID | 638083408 |
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| Product | NAD-dependent DNA ligase LigA |
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| Protein accession | YP_696931 |
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| Protein GI | 110801053 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.00953923 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATAAGA AAAAATTAAT AGAAGAGTTA GTTGAAGAGT TAAATAAATA TGCTTATGAA
TATTATGTTT TAGGAAATTC TTCAGTAACA GATAAAGATT ATGATAAAAA ATACTATGAA
TTAGTAGATT TAGAAAAGGA AACAGGATAT AAATTACCCT ATTCACCTAC TCAAAGAGTT
GGTGATGTAA TTCTTCCTGA GTTTAAAAAA TACACTCATA AAGCTAGACT TTGGAGTTTA
GACAAAGCTC AAACTTTAGA GGAAATTAGA GAGTGGCACA ATAGAAATGT TAAATTCCTT
GAAGAATATA ATAGAACTTC AGATGAAGAA TTACCACCAT TAAAATATAT TTTAACTAAA
AAGTTTGATG GATTAACAAT TAATCTTTCC TATGATGAAA ATGGAGTATT AGTTACTGGA
GCAACTAGAG GAACTGGGGC TATTGGTGAA GATGTCACAG CTCAGGTGAA AACTATAAAA
TCAATTCCAT TAAAAATTGA TTGTCATGAT TTTCTAGAAA TTCATGGAGA GGCTATTATG
ACTACAGAAG CCTTTGAAAA ATACAATAGT GAAGCAGACA CTCCTCTTAA GAATTTAAGA
AATGGAGCAG CGGGAGCTTT AAGAAATTTA AATGTAGCAG AGACAGCTAA AAGAAATTTA
TCAGCTTTCT TCTATGATGT TGGATATAAG GAAGGAGCTC CTTTTAAAAC TTATATGGAA
ATGTTAAATT TCATAAAAAC TAAGGGATTT CCAATGGATG ATTATATTAG GGAATGCACA
ACTTTAGATG AAATTCAAAA AGAAATTGAT TATATAAGAG ATATAAGATT TGATTTAAAT
TATGATATAG ATGGATTAGT TATAGCTATA GATGATATAA GAACTAGAGA ACTTTTAGGA
TACACAGTTA AATTTCCTAA GTGGGCTATT GCATATAAAT TTGAAGCACA GGAGGCTACA
ACTAAGCTTT TAGATGTTGA ATGGAATGTA GGTAGAAGCG GAAGAGTATC TCCCACAGCT
ATCTTAGAGC CAGTAGAGTT AGCTGGAGTT ACTGTTAAGA GGGCTACATT AAATAATATG
GATGATATAG CTAGAAAAGG AGTAAGATTA GGGGCTGAAG TATTTGTAAG AAGAAGCAAT
GATGTTATTC CAGAAATAAT GGGAGTAGTT CCTGAAAGCT TAGAAGGTAC AAAGGAAATT
GAAGAGCCAA AGGTATGTCC AGCTTGTGGA GCACATTTAG TTCATGAAGG AGTTCATATC
TATTGTGAAA ATACTCTAGG ATGTAAGCCT CAAATGGTTA AAACTATAGT TCACTTTGCT
GGAAGAGAAG CTATGAATAT AGCTGGTTTT TCAGAAAAAA CAGCAGAGCA ATTATTTGAA
AAGCTTGATA TAAGAGATAT ATCAGATCTT TATAAACTAG AATATGAAAA ATTATTAGAT
TTAGATAAGT TTGGACCAAA GAAAGCACAA AATCTTTTAG ATGCCATAGA AAAAAGTAAA
GATTGTACTC TAGAAGCATT TCTATATTCC TTAGGAATTC CTAACGTAGG AGTTAAAACT
GCTAAGGATT TAGTAAAGAG ATTTGAGTCT TTAGAAAACC TAGAGAAGGC TACTTTTGAA
GAATTAGTAT CTGTCCAAGA TGTTGGAGAT ATAGTTGCTA GAAGTATAAT AGAATTCTTT
AAAGAGGAAA GAACTTTAAA AGTAATAAAT GAATTATTAT CCCTTGGAGT AAATCCTCAT
TACGAGAAAA AAGAAGTTTT AGAAAGTCCA TTTATGGGAA AAACAGTAGT AGTAACTGGT
ACTTTAGAAA ACTATTCTAG AACATCAATA AAAGAAAAAT TAGAATCTTT AGGAGCAAAG
GTTTCAGGAA GTGTAAGTAA AAAGACTGAT TTTGTAATAG CAGGAGAAGC AGCTGGTTCA
AAATATGATA AAGCTAAATC TTTAGGTGTT ACTATATTAA GTGAAGAAGA ATTTGAAAAT
ATGATATAA
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| Protein sequence | MDKKKLIEEL VEELNKYAYE YYVLGNSSVT DKDYDKKYYE LVDLEKETGY KLPYSPTQRV
GDVILPEFKK YTHKARLWSL DKAQTLEEIR EWHNRNVKFL EEYNRTSDEE LPPLKYILTK
KFDGLTINLS YDENGVLVTG ATRGTGAIGE DVTAQVKTIK SIPLKIDCHD FLEIHGEAIM
TTEAFEKYNS EADTPLKNLR NGAAGALRNL NVAETAKRNL SAFFYDVGYK EGAPFKTYME
MLNFIKTKGF PMDDYIRECT TLDEIQKEID YIRDIRFDLN YDIDGLVIAI DDIRTRELLG
YTVKFPKWAI AYKFEAQEAT TKLLDVEWNV GRSGRVSPTA ILEPVELAGV TVKRATLNNM
DDIARKGVRL GAEVFVRRSN DVIPEIMGVV PESLEGTKEI EEPKVCPACG AHLVHEGVHI
YCENTLGCKP QMVKTIVHFA GREAMNIAGF SEKTAEQLFE KLDIRDISDL YKLEYEKLLD
LDKFGPKKAQ NLLDAIEKSK DCTLEAFLYS LGIPNVGVKT AKDLVKRFES LENLEKATFE
ELVSVQDVGD IVARSIIEFF KEERTLKVIN ELLSLGVNPH YEKKEVLESP FMGKTVVVTG
TLENYSRTSI KEKLESLGAK VSGSVSKKTD FVIAGEAAGS KYDKAKSLGV TILSEEEFEN
MI
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