| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPF_2370 |
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| Symbol | rumA |
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| ID | 4203218 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium perfringens ATCC 13124 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008261 |
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| Strand | - |
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| Start bp | 2639725 |
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| End bp | 2641080 |
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| Gene Length | 1356 bp |
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| Protein Length | 451 aa |
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| Translation table | 11 |
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| GC content | 31% |
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| IMG OID | 638083235 |
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| Product | 23S rRNA (uracil-5-)-methyltransferase RumA |
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| Protein accession | YP_696793 |
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| Protein GI | 110801335 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
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| TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGAAAAG GTAATGAAAT AGAATTATTA GTAGAGGGAA TAGAGTTCCC TGCTAAAGGA
TTCGGCTTTG TAGATGGATT AAAAGTTTAT GCTAAAAATA CTTTCCCAGG ACAAAAAGTC
TTTGGTAGAG TAACTAAAAA AAGAAAAGAG TATGCAGAAA TTAGAGTTTC TGAAGTAAGA
GAAAAAGCTA GTTATGAGGA AGACCAAAAG TGTCCACACT TTGGAGTATG TGGAGGATGT
TCTTCTCAAA CAATTCCTTA TGAGAAACAA TTAGAGCTTA AGGTTGAACA AGTTAAAGAT
TTATTTAAAG AGGCTGAAGT TCCAACAGGA GAGTTTTTAG GTATAGAAAC TAGTCCAATT
CAATGGGAAT ATAGAAATAA GATGGAATAC ACTTTTGGAG ACGAAGAAAA AGGTGGAGAA
CTTACCCTTG GAATGCATAT GAAGGGAAAA TCTTTTGGAA TAGTAAATGT TGATAAGTGT
GTATTAGTTG ATGAAGATTT TAGAAATATA CTAGATACAA CAGTTAAATA TTTCAGAGAA
AAAGGATTAC CTTTCTATAA AATAATGCCT AGAACAGGGT ATTTAAGATA CCTAGTAGTA
AGAAAAAGTG TTAAGACAGA AGAAATTCTT GTTAATTTAG TTACTACAAC TCAAATAGAT
TTTGATTTAA CAGAGTTTAC TGAGCTTATA AAAGGATTAA ACTTAAAAGG AAAATTAAAA
TCAATAATAC ATACAGAAAG TGATGCTTTA TCAGAGGCTG TTATACCAGA GAAAGTAAAC
ATTCTATATG GTGATGATTT TATAACAGAA AATCTTTTAG GATTAAACTT TAAAATATCT
CCATTCTCAT TCTTCCAAAC AAACTCACTA GGAGCTGAAA AGCTATATAG CATAGTGAGA
GATTTTATGG GAGCTGCTGA CAATAAGGTA GTATTTGATC TTTATTGTGG AACAGGAACA
ATAGGTCAAA TAGCAGCGGG AAAAGCTTCT AAGGTTATTG GAATTGAACT TATAGAAGAG
GCAGCTATGG CAGCTAATGA GAATGCAAAA TTAAATGGAT TAAATAATTG TAACTTTATA
GCTGGAGATG TAGCTGAGGT TATAAAAACA GTTAAGGATA AACCAGACAT AATAATTTTA
GATCCACCAA GAAGTGGGGT ACATCCAAAG GCATTAGACT ACGTTATAAA ATTTAATGCT
CCACAAATAA TATATGTTTC ATGTAATCCA AAAACTCTAG TAACTGACTT AAAAGTTTTA
GAAGCTAAGG GATATGAAAT AGAAAAAACT TTACTTATGG ATATGTTCCC TAACACTCCT
CATGTAGAGA CAGTTGTAAA ATTAAATAAG AAATAA
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| Protein sequence | MRKGNEIELL VEGIEFPAKG FGFVDGLKVY AKNTFPGQKV FGRVTKKRKE YAEIRVSEVR
EKASYEEDQK CPHFGVCGGC SSQTIPYEKQ LELKVEQVKD LFKEAEVPTG EFLGIETSPI
QWEYRNKMEY TFGDEEKGGE LTLGMHMKGK SFGIVNVDKC VLVDEDFRNI LDTTVKYFRE
KGLPFYKIMP RTGYLRYLVV RKSVKTEEIL VNLVTTTQID FDLTEFTELI KGLNLKGKLK
SIIHTESDAL SEAVIPEKVN ILYGDDFITE NLLGLNFKIS PFSFFQTNSL GAEKLYSIVR
DFMGAADNKV VFDLYCGTGT IGQIAAGKAS KVIGIELIEE AAMAANENAK LNGLNNCNFI
AGDVAEVIKT VKDKPDIIIL DPPRSGVHPK ALDYVIKFNA PQIIYVSCNP KTLVTDLKVL
EAKGYEIEKT LLMDMFPNTP HVETVVKLNK K
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