| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPF_2318 |
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| Symbol | nifJ |
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| ID | 4203301 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium perfringens ATCC 13124 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008261 |
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| Strand | - |
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| Start bp | 2570072 |
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| End bp | 2573587 |
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| Gene Length | 3516 bp |
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| Protein Length | 1171 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 638083183 |
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| Product | pyruvate-flavodoxin oxidoreductase |
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| Protein accession | YP_696741 |
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| Protein GI | 110801224 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0674] Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit
[COG1013] Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit
[COG1014] Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit |
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| TIGRFAM ID | [TIGR02176] pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCAATGA GAAAAATGAA AACTATGGAT GGTAACACAG CTGCCGCTTA TATATCATAT
GCGTTCACTG ATGTTGCAGC AATATTCCCT ATCACTCCAT CATCACCAAT GGCAGAGTGG
GTTGATGAAA ACAGTGCAAG AGGATTAAAG AACATATTTG GTCAACCTGT AAAAGTAATG
GAAATGCAAT CAGAAGCAGG TGCTGCTGGA GCAGTTCACG GTTCATTACA AGCTGGAGCT
TTAACTACTA CTTACACAGC TTCACAAGGT TTATTATTAA TGATACCAAA CATGTACAAA
ATAGCTGGTG AATTATTACC ATCAGTATTC CATGTATCAG CTAGAGCATT AGCTACTTCA
GCATTAAACA TCTTCGGTGA TCACCAAGAC GTTATGGCTG CAAGACAAAC TGGATTCGCT
ATGTTAGCAG AAGGATCAGT TCAAGAGGTT ATGGATTTAT CAGCAGTTGC TCACTTAGCA
GCTCTTAAAG CTAGAATACC TTTCGTAAAC TTCTTCGATG GATTCAGAAC ATCACATGAA
ATACAAAAAG TTGAACTTTT ACAATACGAT GAATTAAAAG AATTAGTAGA TATGGAAGCT
GTAGAAGAGT TCAGAAGAAG AGCTCTTAAC CCTAACAAGC CTGTTACAAG AGGTACAGCT
CAAAACCCAG ACATCTACTT CCAAGAAAGA GAAGCAGTAA ACAAATTCTA CGATGCAGTT
CCAGAAATAG TTGAGAGCTA CATGAAAGAA ATCACTAAGT TAACTGGTAG AGAGTACAAC
TGTTTCGATT ACTATGGAGC AGCAGATGCT GAAAGAGTTA TCGTAGCTAT GGGATCAGTT
ACTGACTTAA TAGAAGAAAC TGTAGACTAC TTAAACGCTA AAGGAGAAAA AGTTGGTTTA
ATCAAAGTAA GATTATTCAG ACCATTCTCA AATGAAAGAT TAATAAAAGC AATGCCAAAA
ACTGTTAAAA AGGTTGCTGT TTTAGATAGA ACTAAAGAAC CAGGTGCTGC AGGAGAACCT
CTATACTTAG AAGTTAAGAA TGCATTCTAC GGATTAGAAA ATGCTCCTGT AATAGTTGGT
GGTAGATTCG GATTAGGATC AAAAGATACT GTACCAGCTG ATATCGTTGC TGTTTACGAA
AACTTAAATA AAGAGGATGC TAAAAATGGA TTCACTTTAT CAATAGTTGA TGACGTAACT
AACACTTCAT TAGAACCAGT TGGAGACATA GATACTACTC CAGAAGGAAC TAAAGCTTGT
AAGTTCTGGG GATTAGGATC AGACGGAACA GTTGGAGCTA ACAAGAGTGC TATCAAAATC
ATCGGAGACC ATACTGACAT GTATGCTCAA GGATACTTTG CATATGACTC TAAAAAATCA
GGTGGGGTTA CAATTTCTCA CTTAAGATTC GGTAAACAAC CAATAAAATC ACCTTACTTA
ATAAACAAAG CTGATTTCGT TGCTTGTCAT AACCAATCAT ATGTTAACAA ATACTTCGTT
TTAGATGGAT TAAAGAAAAA CGGAACATTC TTATTAAACA CTATCTGGAC TCCAGAAGAA
GTTGCTGAAC ATTTACCAGC AAGTTATAAG AGATTCTTAG CTGAAAACAA CATTAAGTTC
TATACTTTAA ATGCTGTTAA GATAGCTCAA GAAGTTGGAT TAGGTGGAAG AATCAACATG
ATCATGCAAT CAGCATTCTT CAAACTAGCT AACATAATAC CAGTAGAAGA CGCAGTTAAA
TACTTAAAAG ATGCTGTTGT AACTTCATAC GGTAAAAAAG GTGAAAAAGT TGTTAACATG
AACCACGCTG CTATAGACAA AGGAATCGAC GCTATCGTTG AAATCACTGT TCCAGCTGAG
TGGGCTAACG CTAAAGATGA AGTTGTTGAA GCTAAAGAAG TTCCAGCATT CATCAAAAAC
ATTGTTGAAC CAATGAACAG ATTAGAAGGA GATAAACTTC CTGTATCAGC ATTCAACGGA
ATGGAAGATG GTACTTTCGA ACCAGGTACT GCTGCATACG AAAAGAGAGG AATCGGTATA
AACATACCAG AATGGATAGC AGACAACTGT ATCCAATGTA ACCAATGTGC TTACGTTTGT
CCTCATGCTA CAATAAGACC ATTCTTATTA ACTGAGGAAG AAGCTAAAAA TGCTCCTGCT
TCAACTAAGT TAGTTGCTGC TAAAGCATTA AAAACTGAAG AGCCAATGCA ATTCACTATG
GCTGTAAGTA CTTTAGACTG TACTGGATGT GGAAACTGTG CTCAAGTTTG TCCTGCTAAG
GAAAAAGCTT TAGTTATGAA ACCACAACAT ACTCAAGAAG ATCAAATAGA AGCTTGGGAT
TACTGTGTAA ATGATGTTGC ACCTAAGAAA AACCCAATGA ACAAAAACAC AGTTAAAGGT
AGCCAATTCG AGCAACCATT ATTCGAGTTC TCAGGAGCTT GTGCTGGATG TGGAGAAACT
CCATATGCTA AACTTATAAC TCAATTATTC GGAGATAGAA TGATGATAGC TAACGCTACT
GGATGTTCAT CAATCTGGGG TGGATCAGCT CCTTCAACTC CATACACAAC TAACCACAAT
GGTCATGGAC CAGCTTGGGC TAACTCATTA TTCGAGGACA ACGCTGAATT CGGATTAGGT
ATGTTCTTAG GAGTTAAAGC TATAAGAGAA AGATTAGTTG ATCTTGCTGG AAAAGCAATT
GAAGCTGGTG TTAAACCAGA AGCTAAAGAA GCTTTAGAAG CTTGGATAGC TGAAGTTGAC
AACGGAGAAG GAACTAGAGA TAGAGCTGAC GCTGTTGTAG CTGCATTACA AGGTGAAACT
AACGAGTTCG CTAAAGAAAT ATTAAAAGAT CAAGACTACT TAGCTAAGAG ATCACAATGG
ATCTTCGGTG GAGACGGATG GGCTTACGAC ATCGGTTACG GTGGAGTTGA CCACGTTTTA
GCTAGTGGAG AAGATGTAAA CATACTTGTT ATGGATACAG AAATCTACTC AAATACTGGT
GGTCAGGCTT CTAAATCAAC TCCAACTGCT GCTATCGCTA AATTCGCTGC TGCAGGTAAG
AGAACTAAGA AGAAAGATTT AGGAATGATG GCTATGAGCT ATGGTTATGT ATATGTTGCT
CAAATAGCTA TGGGTGCAGA TAAGAACCAA ACTCTTAAAG CTATAGCTGA AGCTGAAGCA
TACAAAGGAC CATCATTAAT AATAGCTTAC GCTCCATGTA TCAGCCACGG ATTAAAAGCT
GGTATGGGTA ACTCTCAATT AGAAGAGAAG AGAGCTGTTG AATGCGGATA CTGGGCTATG
TATAGATTCA ACCCAATGTT AAAAGAAACT GGTAAGAATC CATTCTCATT AGACTCTAAA
GAACCAACTG GTGATTTCAG AGAATTCATA ATGGGAGAAG TTAGATACGC TGCATTAGCA
AAAGCATTCC CAGAAGCTGC TGAAGCTTTA TTCGAAAAGA CTGAAAGAGA TGCTAAAGAA
AGATTAGAAA ACTACAAAAA ACTTGCTGCA AACTAG
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| Protein sequence | MAMRKMKTMD GNTAAAYISY AFTDVAAIFP ITPSSPMAEW VDENSARGLK NIFGQPVKVM
EMQSEAGAAG AVHGSLQAGA LTTTYTASQG LLLMIPNMYK IAGELLPSVF HVSARALATS
ALNIFGDHQD VMAARQTGFA MLAEGSVQEV MDLSAVAHLA ALKARIPFVN FFDGFRTSHE
IQKVELLQYD ELKELVDMEA VEEFRRRALN PNKPVTRGTA QNPDIYFQER EAVNKFYDAV
PEIVESYMKE ITKLTGREYN CFDYYGAADA ERVIVAMGSV TDLIEETVDY LNAKGEKVGL
IKVRLFRPFS NERLIKAMPK TVKKVAVLDR TKEPGAAGEP LYLEVKNAFY GLENAPVIVG
GRFGLGSKDT VPADIVAVYE NLNKEDAKNG FTLSIVDDVT NTSLEPVGDI DTTPEGTKAC
KFWGLGSDGT VGANKSAIKI IGDHTDMYAQ GYFAYDSKKS GGVTISHLRF GKQPIKSPYL
INKADFVACH NQSYVNKYFV LDGLKKNGTF LLNTIWTPEE VAEHLPASYK RFLAENNIKF
YTLNAVKIAQ EVGLGGRINM IMQSAFFKLA NIIPVEDAVK YLKDAVVTSY GKKGEKVVNM
NHAAIDKGID AIVEITVPAE WANAKDEVVE AKEVPAFIKN IVEPMNRLEG DKLPVSAFNG
MEDGTFEPGT AAYEKRGIGI NIPEWIADNC IQCNQCAYVC PHATIRPFLL TEEEAKNAPA
STKLVAAKAL KTEEPMQFTM AVSTLDCTGC GNCAQVCPAK EKALVMKPQH TQEDQIEAWD
YCVNDVAPKK NPMNKNTVKG SQFEQPLFEF SGACAGCGET PYAKLITQLF GDRMMIANAT
GCSSIWGGSA PSTPYTTNHN GHGPAWANSL FEDNAEFGLG MFLGVKAIRE RLVDLAGKAI
EAGVKPEAKE ALEAWIAEVD NGEGTRDRAD AVVAALQGET NEFAKEILKD QDYLAKRSQW
IFGGDGWAYD IGYGGVDHVL ASGEDVNILV MDTEIYSNTG GQASKSTPTA AIAKFAAAGK
RTKKKDLGMM AMSYGYVYVA QIAMGADKNQ TLKAIAEAEA YKGPSLIIAY APCISHGLKA
GMGNSQLEEK RAVECGYWAM YRFNPMLKET GKNPFSLDSK EPTGDFREFI MGEVRYAALA
KAFPEAAEAL FEKTERDAKE RLENYKKLAA N
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