| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPF_2309 |
|---|
| Symbol | deoC |
|---|
| ID | 4203643 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium perfringens ATCC 13124 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008261 |
|---|
| Strand | - |
|---|
| Start bp | 2557460 |
|---|
| End bp | 2558134 |
|---|
| Gene Length | 675 bp |
|---|
| Protein Length | 224 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 33% |
|---|
| IMG OID | 638083174 |
|---|
| Product | deoxyribose-phosphate aldolase |
|---|
| Protein accession | YP_696732 |
|---|
| Protein GI | 110799378 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0274] Deoxyribose-phosphate aldolase |
|---|
| TIGRFAM ID | [TIGR00126] deoxyribose-phosphate aldolase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 39 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATAAAC AACAATTAGC AAAAATGATA GACCACACTA TATTAAAACC AGAAGCTGAT
AAGGCATCAA TAGAAAAGCT TTGCAAAGAA GCTTTAGAAT ACAATTTTGC TTCAGTTTGC
ATAAACCCTA CTAATGTAGA ATTAGCAGCT AAACTTTTAA AAGGCAGCGA AGTAAAGGTT
TGTACAGTAA TAGGTTTCCC TTTAGGAGCA AACACTATGG AAGTTAAAGC TTTTGAAACT
AAAGATGCAA TAGCAAAAGG TGCAGATGAA GTTGATATGG TTATAAACAT AGGAAGATTA
AAAGATAAAG ATTATGAATA TGTAGAGAAA GATATAAAAG CTGTTGTAGA TGCGGCTGAT
AAGAAAGCGC TTACAAAAGT TATAATAGAA ACTTGTCTTT TAACTGAAGA AGAAAAAGTT
AAAGCTTGTG AATTAGCTAA AAAAGCAGGA GCAGATTTCG TTAAAACATC AACTGGATTC
TCAACAGGTG GAGCAACTCC AGAAGATATT AAATTAATGA GAGAAACTGT AGGACCAGAT
ATGGGAGTTA AAGCATCAGG TGGAGTAAGA TCAATAGAAG ATGCTGAAGC TGTAATCAAA
AATGGTGCTA CTAGAATAGG AGCATCAGCT TCAATAGCTA TATGTGAAGG AAAAGTTTCA
GATTCAACAT ATTAA
|
|---|
| Protein sequence | MDKQQLAKMI DHTILKPEAD KASIEKLCKE ALEYNFASVC INPTNVELAA KLLKGSEVKV
CTVIGFPLGA NTMEVKAFET KDAIAKGADE VDMVINIGRL KDKDYEYVEK DIKAVVDAAD
KKALTKVIIE TCLLTEEEKV KACELAKKAG ADFVKTSTGF STGGATPEDI KLMRETVGPD
MGVKASGGVR SIEDAEAVIK NGATRIGASA SIAICEGKVS DSTY
|
|---|
| |