Gene CPF_2171 details

Gene Information

• Locus tag: CPF_2171
• Symbol: hlyIII
• ID: 4201300
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Clostridium perfringens ATCC 13124
• Kingdom: Bacteria
• Replicon accession: NC_008261
• Strand: -
• Start bp: 2407867
• End bp: 2408508
• Gene Length: 642 bp
• Protein Length: 213 aa
• Translation table: 11
• GC content: 28%
• IMG OID: 638083036
• Product: hemolysin III
• Protein accession: YP_696595
• Protein GI: 110799044
• COG category: [R] General function prediction only
• COG ID: [COG1272] Predicted membrane protein, hemolysin III homolog
• TIGRFAM ID: [TIGR01065] channel protein, hemolysin III family

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 0.255778
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGAGTGAAG AATTAAATTT TTATACTAGA GAAGAGGAAT TTGCTAATGC CATAACCCAC 
GGAATTGGAG TGGTATTAGC CATAGTGGGA GCTGTTTTAC TTATAGTTTT CTCATCTTTA 
AGTAGAGATT TTTATAAGAT AATAAGTTTC ACTATATTTG GAATAACTTT ATTTTTACTT 
TATTTAGGAT CAACATTATA TCATAGTATT CCTAATAAAA AAGTAAAGAG GTTTTTAAGG 
ATAATTGACC ATTCATCTAT TTATCTTTTA ATAGCAGGAA CTTATACACC CTATGTATTA 
GTATGTTTAA GAGATAATAA AAAAGCTATG GCAATATTTA TTATGATTTG GGTAATGACC 
ATATTAGGAA TAGTATTTAA ATTTATCTGT ATAAATAAGT TTGAGAATCT ATCAACCCTA 
TTATATATTT TTATGGGGTG GTCAGTTATC TTTGTAGTTA AGGATGTATG GCAAAGAGTA 
CCTCATATGG CCGTCTTTTG GCTTCTTATA GGTGGATTGT TTTATACCTT AGGATGTATA 
TTTTTTGTTT TAGATAGAAT GCCATACAAT CATGCTATCT GGCATTTATT TGTAATGGGA 
GGAAGCATAA GTCACTTTTT CTCTGTAATA TTATATTTAT AA 

 

Protein sequence

MSEELNFYTR EEEFANAITH GIGVVLAIVG AVLLIVFSSL SRDFYKIISF TIFGITLFLL 
YLGSTLYHSI PNKKVKRFLR IIDHSSIYLL IAGTYTPYVL VCLRDNKKAM AIFIMIWVMT 
ILGIVFKFIC INKFENLSTL LYIFMGWSVI FVVKDVWQRV PHMAVFWLLI GGLFYTLGCI 
FFVLDRMPYN HAIWHLFVMG GSISHFFSVI LYL