| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPF_2169 |
|---|
| Symbol | |
|---|
| ID | 4202528 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium perfringens ATCC 13124 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008261 |
|---|
| Strand | + |
|---|
| Start bp | 2405113 |
|---|
| End bp | 2406219 |
|---|
| Gene Length | 1107 bp |
|---|
| Protein Length | 368 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 27% |
|---|
| IMG OID | 638083034 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_696593 |
|---|
| Protein GI | 110800685 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0628] Predicted permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.215488 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGTTTAAAA AACATAATTT TCACTTTAAT TGGCTCCCAC TAATATTGAT ATCAACAGTT
TCAATCATGT TAATTTTTAA TATTAGGAGC ATTTTAAGTG AAGGTATTAG ACCATTTTTA
TCAGTTTTAA CACCATTTTT TTGGGCTTTT GGTATAGCTT ATTTAATAAA TCCTCTCATG
ATGCTTATAG AAAAGAAGTT TAAACTTAAG AGAGCTTTTT CCTTAATGAT AAGCTATATT
TTAGTTATAA TATGTGTTTA CATATTAATT GCAATTATTG TTCCTACAAT ATTTGATAGT
TTGTCAGAAT TATTTAGTAA TCTTAGTGAA TATGCATCCT CTGCTGAAAG TTGGATTAAT
AACACCTTAG CAAGTATGAA TGTTCCTTTA GATTTAAATC ATTTAAATAC TTCTGCTACG
GAATTTATTT CTAAGACATC AACCTTACTA TCTAATATAG TAGGTAGCTT GTTAACTCAA
ACTATAAAAA TAACTTCATC TGTTGTTAAA TTTGTATTTG GATTTATTAT TTCCATATAC
ATGTTAATGG ATAAGGAAAC TTTAATTGAA GGGTGTAAAA AAATTATAAT TGCAGTTATG
CCATCTGAAA AATCTTCAGA ACTTTTTATT AGTTTCATGG CAGAAGCTCA CAATATCTTT
AGTAGATTTA TAATAGGTAA AATTATAGAC TCACTTATAA TAGGAGTGCT TTGTTACATA
GGTTTATTAT TAATGGGTAC TCAGTATGCG GTGCTTATTT CTTTCATAGT TGGATTAACA
AATATGATTC CATATTTCGG TCCATTTATA GGAATGATTC CTGCATTTTT ATTAACACTT
ATTGTTCAAC CATCTATGGC AATATGGGTT CTTTTATTCA TATTCATCCT TCAACAATTT
GATGGTTGGT ACTTAGGTCC AAAAATATTA GGAGATCAAG TAGGTGTTTC TCCACTATTT
ATAATATTCG CTGTTACAGT TGGTGGTGGA ATATTTGGTG TTTTAGGAAT GTTCTTAAGT
GTTCCTATAA TAGCCTTAAT AAAAATATAT ACAGAAAAAT TCATTGAATA CAGATTAGAA
AATAAAAAAC AAAACTTTAG TGAATAA
|
|---|
| Protein sequence | MFKKHNFHFN WLPLILISTV SIMLIFNIRS ILSEGIRPFL SVLTPFFWAF GIAYLINPLM
MLIEKKFKLK RAFSLMISYI LVIICVYILI AIIVPTIFDS LSELFSNLSE YASSAESWIN
NTLASMNVPL DLNHLNTSAT EFISKTSTLL SNIVGSLLTQ TIKITSSVVK FVFGFIISIY
MLMDKETLIE GCKKIIIAVM PSEKSSELFI SFMAEAHNIF SRFIIGKIID SLIIGVLCYI
GLLLMGTQYA VLISFIVGLT NMIPYFGPFI GMIPAFLLTL IVQPSMAIWV LLFIFILQQF
DGWYLGPKIL GDQVGVSPLF IIFAVTVGGG IFGVLGMFLS VPIIALIKIY TEKFIEYRLE
NKKQNFSE
|
|---|
| |