Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPF_2165 |
Symbol | |
ID | 4203595 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium perfringens ATCC 13124 |
Kingdom | Bacteria |
Replicon accession | NC_008261 |
Strand | + |
Start bp | 2402101 |
End bp | 2402811 |
Gene Length | 711 bp |
Protein Length | 236 aa |
Translation table | 11 |
GC content | 34% |
IMG OID | 638083030 |
Product | putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase |
Protein accession | YP_696589 |
Protein GI | 110800913 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG2171] Tetrahydrodipicolinate N-succinyltransferase |
TIGRFAM ID | [TIGR00965] 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [TIGR03532] 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.000696509 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGTTATA ACTTTACAGA TCCATATGAA ATTGCTAGAT TCATAAAGGA AGTAAAAAAA TCAACTCCTG TTAAAGTTTA TCTTAAAGGT AACTTAGAAG GTGTAGAATT AGGTTCAATA GAATGTTATG GAAATAATGA TTTCTATGTA TTATTTGGAG AAAGTGATGA AGTTGCTACT TTCTTAACAG AAAATAAAGA TAAAATAGTA AGCTTTAGAC TTGAAAATGA TAGAAGAAAC TCAGCTATTC CAATGTTAGA CCTTTTAAAC ATAAACGCTA GAATCGAACC TGGCGCAATA ATAAGAGACA GAGTATCAAT CGGAGATAAT GCTGTTATAA TGATGGGTGC TGTCATAAAC ATAGGAGCTG AAATAGGCGA AAGTACAATG GTAGATATGA ACGCTGTAAT AGGTGCTAGA GGAAAACTTG GAAAAAGAGT TCACTTAGGT GCTGGAGCTG TTGTTGCTGG AGTTTTAGAA CCACCTAGCA AAACTCCATG TATAATAGAA GACGATGTTT TAATAGGAGC TAATGCTGTT ATCCTTGAAG GTGTTAAAAT TGGAAAAGGC TCAGTTGTAG CTGCTGGCTC AGTTGTAGTT GAAGATGTAC CAGCTGGCGT AGTTGTAGCT GGAACTCCTG CTAAAATTAT TAAATCTGTT GATGAAAAGA CTAAAGATAA AACAGAAATA TTAGATGATT TAAGAAAATA A
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Protein sequence | MSYNFTDPYE IARFIKEVKK STPVKVYLKG NLEGVELGSI ECYGNNDFYV LFGESDEVAT FLTENKDKIV SFRLENDRRN SAIPMLDLLN INARIEPGAI IRDRVSIGDN AVIMMGAVIN IGAEIGESTM VDMNAVIGAR GKLGKRVHLG AGAVVAGVLE PPSKTPCIIE DDVLIGANAV ILEGVKIGKG SVVAAGSVVV EDVPAGVVVA GTPAKIIKSV DEKTKDKTEI LDDLRK
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